• Report (original)
• Predictions (original)
• Predictions (experimental) (original)

Group: sgn - Dataset: sgn

SUMMARY

This report generated on 2020-05-02

• Associations: 1358
• Lines in file (incl headers): 1458
• Lines skipped: 100

Header From Original Association File

Contents

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000020

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

gorule-0000057

gorule-0000058

other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

• total: 0

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

• total: 0

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

• total: 1

Messages

• WARNING - Violates GO Rule: GORULE:0000007: IPI should not be used with catalytic activity molecular function terms -- SGN 5257 pmt GO:0030750 PMID:17221359 IPI NCBI_gi:86438859 F putrescine N-methyltransferase Solyc06g053510 gene taxon:4081 20090625 SGN

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 22

Messages

• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 364 c14 GO:0044428 PMID:11444695 IDA C cysteine protease CYP1 C14|tdi-65|Solyc12g088670 gene taxon:4081 20090612 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 364 c14 GO:0044434 PMID:11444695 IDA C cysteine protease CYP1 C14|tdi-65|Solyc12g088670 gene taxon:4081 20090612 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 1027 LeST1-1 GO:0044459 PMID:12937983 IDA C sulfate transporter 1 THT1-3|THT7-1|THT1-4|Solyc10g047170 gene taxon:4081 20090929 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 5291 amt1 GO:0044459 PMID:8755617 IDA C AMT1 Solyc09g090730 gene taxon:4081 20090929 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 5389 LeST1-2 GO:0044459 PMID:12937983 IDA C sulfate transporter 2 AF347614|Solyc12g056930 gene taxon:4081 20090929 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 17699 SlBCAT4 GO:0044434 PMID:20435740 IDA C SlBCAT4 Solyc03g043880 gene taxon:4081 20120131 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 110964 SlBCAT2 GO:0044429 PMID:20435740 IDA C SlBCAT2 Solyc07g021630 gene taxon:4081 20120130 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 68 SlIAA3 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA3 LeIAA3|IAA3|Solyc09g065850 gene taxon:4081 20141120 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 463 e GO:0006950 PMID:22314799 IEP P entire b|SlIAA9|iaa9|LeIAA4|IAA4|ctd1|Solyc04g076850|SlIAA4 gene taxon:4081 20141120 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 4506 Asr2 GO:0009628 PMID:17602312 IEP P Abscicic acid stress ripening 2 Solyc04g071580 gene taxon:4081 20080215 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 9403 SlMAPKKK1 GO:0006950 PMID:25036993 IDA P MAP kinase kinase kinase 1 Solyc01g005030|MAPKKK1 gene taxon:4081 20141103 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 20062 iaa14 GO:0009628 PMID:22314799 IDA P auxin-regulated IAA14 Solyc03g121060|SlIAA14 gene taxon:4081 20141121 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 22083 Asr_2 GO:0009628 PMID:17602312 IEP P Abscicic acid stress ripening 2 Solyc04g071580|Asr2 gene taxon:4081 20120509 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 26635 SlC3H43 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 43 Solyc06g054620|C3H43 gene taxon:4081 20150304 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 27917 SlC3H48 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 48 24870401|C3H48|Solyc06g082010 gene taxon:4081 20150304 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 28803 SlIAA20 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA20 SlIAA20|iaa20|Solyc07g019450 gene taxon:4081 20141121 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 29921 SlC3H50 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 50 Solyc07g053750|C3H50 gene taxon:4081 20150304 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 35249 SlIAA1 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA1 IAA1|Solyc09g083280 gene taxon:4081 20141124 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 40630 SlMAPKKK83 GO:0006950 PMID:25036993 IEP P MAP kinase kinase kinase 83 MAPKKK83|Solyc12g005360 gene taxon:4081 20141111 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 40851 SlC3H73 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 73 Solyc12g008660|C3H73 gene taxon:4081 20150304 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 40914 SlMAPKKK84 GO:0006950 PMID:25036993 IEP P MAP kinase kinase kinase 84 MAPKKK84|Solyc12g009340 gene taxon:4081 20141111 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 42691 SlC3H80 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 80 C3H80|Solyc12g089260 gene taxon:4081 20150304 SGN

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

• total: 0

gorule-0000013

Taxon-appropriate annotation check

• total: 6

Messages

• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- SGN 1398 pe GO:0042335 PMID:22623518 IDA P sticky peel CD2 gene taxon:4081 20120530 SGN
• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- SGN 4495 cwp1 GO:0008544 PMID:17877702 IEP P cuticular water permeability 1 Solyc04g082520 gene taxon:4081 20080123 SGN
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- SGN 8525 SlC3H1 GO:0042630 PMID:24870401 ISS P Zinc finger transcription factor 1 C3H1|Solyc00g007330 gene taxon:4081 20150304 SGN
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- SGN 9751 SlC3H6 GO:0042630 PMID:24870401 ISS P Zinc finger transcription factor 6 Solyc01g008600|C3H6 gene taxon:4081 20150304 SGN
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- SGN 27512 SlC3H47 GO:0042630 PMID:24870401 ISS P Zinc finger transcription factor 47 Solyc06g072720|C3H47 gene taxon:4081 20150304 SGN
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- SGN 40670 SlC3H71 GO:0042630 PMID:24870401 ISS P Zinc finger transcription factor 71 Solyc12g005770|C3H71 gene taxon:4081 20150304 SGN

gorule-0000015

Dual species taxon check

• total: 0

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 6

Messages

• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 246 crtiso GO:0009536 PMID:11884678 IC C carotenoid isomerase tangerine|Solyc10g081650 gene taxon:4081 20070920 SGN
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 8265 SlSK GO:0005634 PMID:19533382 IC C SlSK Solyc07g055200 gene taxon:4081 20090730 SGN
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 1381 sw5 GO:0051607 PMID:11043474 IC NCBI_gi:15418708 P Spotted wilt resistance-5 Sw-5|Solyc09g098130.1.1 gene taxon:4081 20100107 SGN
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 5583 tg1 GO:0016120 SGN_ref:861 IC P test gene tg2|tg gene taxon:4081 20121115 SGN
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 8336 MSH2 GO:0006281 PMID:19690966 IC P DNA mismatch repair protein 2 gene taxon:4081 20100416 SGN
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 8337 MSH7 GO:0006281 PMID:19690966 IC P DNA mismatch repair protein 7 gene taxon:4081 20100416 SGN

gorule-0000017

IDA annotations must not have a With/From entry

• total: 0

gorule-0000018

IPI annotations require a With/From entry

• total: 0

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 94

Messages

• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044428) -- SGN 364 c14 GO:0044428 PMID:11444695 IDA C cysteine protease CYP1 C14|tdi-65|Solyc12g088670 gene taxon:4081 20090612 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044434) -- SGN 364 c14 GO:0044434 PMID:11444695 IDA C cysteine protease CYP1 C14|tdi-65|Solyc12g088670 gene taxon:4081 20090612 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044459) -- SGN 1027 LeST1-1 GO:0044459 PMID:12937983 IDA C sulfate transporter 1 THT1-3|THT7-1|THT1-4|Solyc10g047170 gene taxon:4081 20090929 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044459) -- SGN 5291 amt1 GO:0044459 PMID:8755617 IDA C AMT1 Solyc09g090730 gene taxon:4081 20090929 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044459) -- SGN 5389 LeST1-2 GO:0044459 PMID:12937983 IDA C sulfate transporter 2 AF347614|Solyc12g056930 gene taxon:4081 20090929 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044434) -- SGN 17699 SlBCAT4 GO:0044434 PMID:20435740 IDA C SlBCAT4 Solyc03g043880 gene taxon:4081 20120131 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044429) -- SGN 110964 SlBCAT2 GO:0044429 PMID:20435740 IDA C SlBCAT2 Solyc07g021630 gene taxon:4081 20120130 SGN
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004872) -- SGN 662 Gr GO:0004872 PMID:15834010 IMP F green ripe gr|DQ372895|Solyc01g104340 gene taxon:4081 20071005 SGN
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004872) -- SGN 1046 Nr2 GO:0004872 PMID:15834010 IMP F Never ripe-2 Nr-2|Never-ripe|Solyc09g075440 gene taxon:4081 20071005 SGN
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001047) -- SGN 4482 TAGL1 GO:0001047 PMID:19891701 IPI NCBI_gi:24967134 F Tomato AGAMOUS-like 1 tagl1|Solyc07g055920 gene taxon:4081 20120224 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0000988) -- SGN 8326 HSFA2 GO:0000988 PMID:19491106 IDA F heat stress transcription factor A2 gene taxon:4081 20120224 SGN
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015684) -- SGN 253 chln GO:0015684 PMID:10359845 IMP NCBI_gi:4753800 P chloronerva Solyc01g100490 gene taxon:4081 20080702 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 8525 SlC3H1 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 1 C3H1|Solyc00g007330 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 8528 SlC3H2 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 2 Solyc00g007450|C3H2 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 8644 SlC3H3 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 3 Solyc00g012540|C3H3 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 9297 SlC3H4 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 4 Solyc00g198360|24870401|C3H4 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 9711 SlC3H5 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 5 C3H5|Solyc01g008170 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 9751 SlC3H6 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 6 Solyc01g008600|C3H6 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0075177) -- SGN 9783 SlCaM1 GO:0075177 PMID:23621884 IDA P Calmodulin 1 Solyc01g008950|Cam1 gene taxon:4081 20130610 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 10169 SlC3H7 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 7 Solyc01g014850|C3H7 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 11148 SlC3H8 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 8 Solyc01g067550|C3H8 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 11283 SlC3H9 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 9 Solyc01g073940|C3H9 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 11581 SlC3H10 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 10 C3H10|Solyc01g087030 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 11595 SlC3H11 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 11 C3H11|Solyc01g087170 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 11683 SlC3H12 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 12 Solyc01g088100|C3H12 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 12626 SlC3H13 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 13 Solyc01g100990|C3H13 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 12732 SlC3H14 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 14 C3H14|Solyc01g103090 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 13441 SlC3H15 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 15 Solyc01g110490|C3H15 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 13914 SlC3H16 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 16 Solyc02g021760|C3H16 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 14949 SlC3H17 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 17 Solyc02g070240|C3H17 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 15717 SlC3H18 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 18 C3H18|Solyc02g082110 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 15915 SlC3H19 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 19 Solyc02g084200|C3H19 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 15946 SlC3H20 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 20 Solyc02g084520|C3H20 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 16122 SlC3H21 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 21 C3H21|Solyc02g086430 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 16130 SlC3H22 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 22 C3H23|Solyc02g086510 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 17061 SlC3H23 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 23 C3H23|Solyc03g006350 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 17447 SlC3H24 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 24 C3H24|Solyc03g026350 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 18130 SlC3H25 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 25 24870401|C3H25|Solyc03g063200 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 18178 SlC3H26 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 26 Solyc03g063680|C3H26 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 19145 SlC3H27 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 27 Solyc03g111580|C3H27 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 19615 SlC3H28 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 28 Solyc03g116410|C3H28 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 19616 SlC3H29 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 29 Solyc03g116420|C3H29 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 19906 SlC3H30 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 30 Solyc03g119430|C3H30 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 20503 SlC3H31 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 31 Solyc04g008550|24870401|C3H31 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 21009 SlC3H32 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 32 C3H32|Solyc04g017710 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 21924 SlC3H33 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 33 Solyc04g057990|24870401|C3H33 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 22003 SlC3H34 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 34 Solyc04g064770|C3H34 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 22006 SlC3H35 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 35 Solyc04g064800|C3H35 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 23325 SlC3H36 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 36 Solyc05g008670|C3H36 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 23392 SlC3H37 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 37 Solyc05g009350|C3H37 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 24415 SlC3H38 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 38 Solyc05g032650|C3H38 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 25003 SlC3H39 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 39 Solyc05g052570|C3H39 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 25658 SlC3H40 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 40 Solyc06g008740|C3H40 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 25689 SlC3H41 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 41 Solyc06g009070|24870401|C3H41 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 26633 SlC3H42 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 42 Solyc06g054600|C3H42 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 26635 SlC3H43 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 43 Solyc06g054620|C3H43 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 26864 SlC3H44 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 44 Solyc06g063020|C3H44 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 27290 SlC3H45 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 45 Solyc06g069440|C3H45 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 27431 SlC3H46 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 46 Solyc06g071860|C3H46 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 27917 SlC3H48 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 48 24870401|C3H48|Solyc06g082010 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 29649 SlC3H49 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 49 Solyc07g047940|C3H49 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 29921 SlC3H50 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 50 Solyc07g053750|C3H50 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 30542 SlC3H51 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 51 Solyc07g065290|C3H51 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 32228 SlC3H52 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 52 Solyc08g068830|C3H52 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 33261 SlC3H53 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 53 C3H53|Solyc09g007230 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 34992 SlC3H54 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 54 Solyc09g074640|C3H54 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 35536 SlC3H55 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 55 Solyc09g092250|C3H55 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 36047 SlC3H56 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 56 C3H56|Solyc10g008880 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 36469 SlC3H57 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 57 C3H57|Solyc10g038000 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 36674 SlC3H58 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 58 Solyc10g047040|C3H58 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37538 SlC3H59 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 59 Solyc10g078750|C3H59 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37575 SlC3H60 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 60 Solyc10g079120|C3H60 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37582 SlC3H61 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 61 Solyc10g079190|C3H61 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37685 SlC3H62 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 62 C3H62|Solyc10g080260 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37707 SlC3H63 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 63 C3H63|Solyc10g080480 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0075177) -- SGN 37771 SlCaM2 GO:0075177 PMID:23621884 IDA P Calmodulin 2 CAM2|Solyc10g081170 gene taxon:4081 20130610 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37912 SlC3H64 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 64 C3H64|Solyc10g083640 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 38594 SlC3H65 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 65 Solyc11g008900|C3H65 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 39912 SlC3H66 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 66 Solyc11g062240|C3H66 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40020 SlC3H67 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 67 C3H67|Solyc11g065320 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40165 SlC3H68 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 68 Solyc11g066830|C3H68 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40312 SlC3H69 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 69 Solyc11g069340|C3H69 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40380 SlC3H70 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 70 Solyc11g070070|C3H70 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40670 SlC3H71 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 71 Solyc12g005770|C3H71 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40750 SlC3H72 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 72 C3H72|Solyc12g006620 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40851 SlC3H73 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 73 Solyc12g008660|C3H73 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40871 SlC3H74 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 74 C3H74|Solyc12g008870 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40919 SlC3H75 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 75 Solyc12g009390|C3H75 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 41304 SlC3H76 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 76 Solyc12g017410|C3H76 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 41592 SlC3H77 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 77 Solyc12g035250|C3H77 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 41892 SlC3H78 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 78 C3H78|Solyc12g040230 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 41899 SlC3H79 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 79 Solyc12g040300|C3H79 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 42691 SlC3H80 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 80 C3H80|Solyc12g089260 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042965) -- SGN 43099 SlGRX1 GO:0042965 PMID:20862491 IDA P glutaredoxin gene gene taxon:4081 20101210 SGN

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

• total: 0

gorule-0000029

IEAs should be less than one year old.

• total: 0

gorule-0000030

Deprecated GO_REFs are not allowed

• total: 0

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

• total: 0

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

• total: 0

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

• total: 0

gorule-0000043

Check for valid combination of evidence code and GO_REF

• total: 0

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

• total: 0

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

• total: 0

gorule-0000057

Group specific filter rules should be applied to annotations

• total: 0

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

• total: 0

other

• total: 0

GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004784 superoxide dismutase activity IDA
GO:0019430 removal of superoxide radicals AnnotationPropagation P GO:0004784 superoxide dismutase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0004672 protein kinase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IDA
GO:0010951 negative regulation of endopeptidase activity AnnotationPropagation P GO:0004869 cysteine-type endopeptidase inhibitor activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0016209 antioxidant activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045544 gibberellin 20-oxidase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045544 gibberellin 20-oxidase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0033744 L-methionine:thioredoxin-disulfide S-oxidoreductase activity IDA
GO:0010466 negative regulation of peptidase activity AnnotationPropagation P GO:0030414 peptidase inhibitor activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008234 cysteine-type peptidase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045544 gibberellin 20-oxidase activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045552 dihydrokaempferol 4-reductase activity ISS