Table of contents

Report

Group: aspgd - Dataset: aspgd

SUMMARY

This report generated on 2020-04-23

Header From Original Association File

!gaf-version: 2.0
! File name: gene_association.aspgd
! Organism 1: Aspergillus nidulans FGSC A4, genome version: s10-m04-r16, taxon: 227321
! Organism 2: Aspergillus fumigatus Af293, genome version: s03-m05-r17, taxon: 330879
! Organism 3: Aspergillus niger CBS 513.88, genome version: s01-m07-r13, taxon: 425011
! Organism 4: Aspergillus oryzae RIB40, genome version: s01-m09-r14, taxon: 510516
! Organism 5: Aspergillus terreus NIH2624, taxon: 341663
! Organism 6: Aspergillus brasiliensis CBS 101740, taxon: 767769
! Organism 7: Aspergillus zonatus, taxon: 41063
! Organism 8: Aspergillus acidus CBS 106.47, taxon: 1137211
! Organism 9: Aspergillus wentii DTO 134E9, taxon: 1073089
! Organism 10: Aspergillus versicolor, taxon: 46472
! Organism 11: Aspergillus carbonarius ITEM 5010, taxon: 602072
! Organism 12: Aspergillus aculeatus ATCC16872, taxon: 690307
! Organism 13: Aspergillus glaucus CBS 516.65, taxon: 1160497
! Organism 14: Neosartorya fischeri NRRL 181, taxon: 331117
! Organism 15: Aspergillus clavatus NRRL 1, taxon: 344612
! Organism 16: Aspergillus flavus NRRL 3357, taxon: 332952
! Organism 17: Aspergillus tubingensis CBS 134.48, taxon: 767770
! Organism 18: Aspergillus sydowii, taxon: 75750
! Organism 19: Aspergillus fumigatus A1163, taxon: 451804
! Organism 20: Aspergillus kawachii, taxon: 1033177
! Date created: Wed Apr 1 01:23:24 2020
! Created by: The Aspergillus Genome Database (http://www.aspergillusgenome.org/)
! Contact Email: aspergillus-curator AT lists DOT stanford DOT edu
! Funding: NIAID at US NIH, grant number R01-AI077599-01
!

Contents

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gorule-0000028

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other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013

Taxon-appropriate annotation check

Messages

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

gorule-0000029

IEAs should be less than one year old.

Messages

gorule-0000030

Deprecated GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

Messages

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

gorule-0000057

Group specific filter rules should be applied to annotations

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

other

Predictions

GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:1904659 glucose transmembrane transport AnnotationPropagation P GO:0005358 high-affinity glucose:proton symporter activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0005358 high-affinity glucose:proton symporter activity IMP
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0015753 D-xylose transmembrane transport AnnotationPropagation P GO:0015148 D-xylose transmembrane transporter activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0006508 proteolysis AnnotationPropagation P GO:0004177 aminopeptidase activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0006508 proteolysis AnnotationPropagation P GO:0016805 dipeptidase activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0015698 inorganic anion transport AnnotationPropagation P GO:0005253 anion channel activity IDA
GO:0098656 anion transmembrane transport AnnotationPropagation P GO:0005253 anion channel activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004097 catechol oxidase activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:1901998 toxin transport AnnotationPropagation P GO:0019534 toxin transmembrane transporter activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0019534 toxin transmembrane transporter activity IMP
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004602 glutathione peroxidase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004602 glutathione peroxidase activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation ISM

Predictions (experimental)