GAF summary
Found 14 annotations in 29 lines.
GAF Validation Summary Errors are reported first.
For rule GO_AR:0000018 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000018) IPI annotations require a With/From entry, there are 3 violations with type Warning.
GAF Prediction Summary
No inferences or predictions to report.
Used Ontology Summary
go/extensions/go-gaf go/releases/2020-02-20/extensions/go-gaf.owl
This report generated on 2020-02-22
!gaf-version: 2.1
!
!Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in
!ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz
!
!Generated: 2019-12-17 09:38
!GO-version: http://purl.obolibrary.org/obo/go/releases/2019-12-14/extensions/go-plus.owl
!
No 'NOT' annotations to 'protein binding ; GO:0005515'
IEP and HEP usage is restricted to terms from the Biological Process ontology
IPI should not be used with GO:0003824 catalytic activity or descendents
No annotations should be made to uninformative high level terms
ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
Taxon-appropriate annotation check
Dual species taxon check
With/From: IC annotations require a With/From GO ID
IDA annotations must not have a With/From entry
IPI annotations require a With/From entry
ComplexPortal CPX-57 sodium_potassium_exchanging atpase complex GO:0005524 PMID:18075585 IPI F Sodium:potassium-exchanging ATPase complex sodium:potassium ATPase alpha-beta-gamma complex|ATP1A1:ATP1B1:FXYD2|sodium:potassium pump|Na+/K+ ATPase alpha-beta-gamma complex|Na(+)/K(+)-ATPase pump|Na+/K+-exchanging ATPase complex|Na+/K+-ATPase pump|Na+/K+ pump|Na(+)/K(+) pump|Na(+)/K(+)-exchanging ATPase complex|sodium:potassium ATPase pump|Na(+)/K(+) ATPase alpha-beta-gamma complex protein_complex taxon:9823 20150629 ComplexPortalComplexPortal CPX-57 sodium_potassium_exchanging atpase complex GO:0030955 PMID:18075585 IPI F Sodium:potassium-exchanging ATPase complex sodium:potassium ATPase alpha-beta-gamma complex|ATP1A1:ATP1B1:FXYD2|sodium:potassium pump|Na+/K+ ATPase alpha-beta-gamma complex|Na(+)/K(+)-ATPase pump|Na+/K+-exchanging ATPase complex|Na+/K+-ATPase pump|Na+/K+ pump|Na(+)/K(+) pump|Na(+)/K(+)-exchanging ATPase complex|sodium:potassium ATPase pump|Na(+)/K(+) ATPase alpha-beta-gamma complex protein_complex taxon:9823 20150629 ComplexPortalComplexPortal CPX-57 sodium_potassium_exchanging atpase complex GO:0031402 PMID:18075585 IPI F Sodium:potassium-exchanging ATPase complex sodium:potassium ATPase alpha-beta-gamma complex|ATP1A1:ATP1B1:FXYD2|sodium:potassium pump|Na+/K+ ATPase alpha-beta-gamma complex|Na(+)/K(+)-ATPase pump|Na+/K+-exchanging ATPase complex|Na+/K+-ATPase pump|Na+/K+ pump|Na(+)/K(+) pump|Na(+)/K(+)-exchanging ATPase complex|sodium:potassium ATPase pump|Na(+)/K(+) ATPase alpha-beta-gamma complex protein_complex taxon:9823 20150629 ComplexPortalAspect can only be one of C, P, F and should be repaired using the GO term
All IEAs over a year old are removed
Deprecated GO_REFs are not allowed
IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference
Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants
Qualifier: IKR evidence code requires a NOT qualifier
Check for valid combination of evidence code and GO_REF
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.
Annotations to ISS, ISA and ISO should not be self-referential