• Summary (original)
• Report (original)
• OWLTools check (original)
• Predictions (original)
• Predictions (experimental) (original)

GAF summary

Found 6307 annotations in 6315 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 25 violations with type Warning.

GAF Prediction Summary

Found 120 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-12-08/extensions/go-gaf.owl

Group: genedb - Dataset: genedb_lmajor

SUMMARY

This report generated on 2019-12-09

• Associations: 6307
• Lines in file (incl headers): 6325
• Lines skipped: 17

Header From Original Association File

!gaf-version: 1.0

Contents

gorule-0000001

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000020

gorule-0000027

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

other

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.1 specifications

• total: 3

Messages

• ERROR - Unknown evidence class: Expecting a known ECO GAF code, e.g ISS (NR) -- GeneDB LmjF.20.0560:mRNA LmjF.20.0560 GO:0005829 GO_REF:0000002 NR C cytidine triphosphate synthase, putative LmjF20.0560 transcript taxon:347515 20100816 GeneDB
• ERROR - Unknown evidence class: Expecting a known ECO GAF code, e.g ISS (NR) -- GeneDB LmjF.03.0080:mRNA GAT GO:0005829 GO_REF:0000002 NR C glycerol-3-phosphate acyl transferase LmjF03.0080 transcript taxon:347515 20100803 GeneDB
• ERROR - Unknown evidence class: Expecting a known ECO GAF code, e.g ISS (NR) -- GeneDB LmjF.20.1120:mRNA TOR4 GO:0005829 GO_REF:0000002 NR C phosphatidylinositol 3-kinase, putative LmjF20.1120 transcript taxon:347515 20100817 GeneDB

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

• total: 0

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

• total: 0

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

• total: 0

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 25

Messages

• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.22.1350.2:mRNA LmjF.22.1350 GO:0006810 GO_REF:0000024 ISO GeneDB:Tb927.7.3350 P palmitoyl acyltransferase 11, putative LmjF22.1350 transcript taxon:347515 20110802 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.19.0800:mRNA ABCF2 GO:0006810 GO_REF:0000002 ISS P ABC transport system ATP-binding protein, putative LmjF19.0800 transcript taxon:347515 20090731 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.33.0230:mRNA LmjF.33.0230 GO:0006810 PMID:19240115 ISO GeneDB:Tb927.10.10800 P palmitoyl acyltransferase 2, putative LmjF33.0230 transcript taxon:347515 20110620 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.25.2280:mRNA LmjF.25.2280 GO:0006810 PMID:19240115 ISO GeneDB:Tb927.3.2400 P palmitoyl acyltransferase 10, putative LmjF25.2280 transcript taxon:347515 20110802 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.21.1390:mRNA LmjF.21.1390 GO:0006810 PMID:19240115 ISO GeneDB:Tb927.10.690 P palmitoyl acyltransferase 3, putative LmjF21.1390 transcript taxon:347515 20110620 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.02.0110:mRNA LmjF.02.0110 GO:0006810 GO_REF:0000012 ISA UniProtKB:O43592 P tRNA exportin, putative LmjF02.0110 transcript taxon:347515 20140507 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.11.1090:mRNA LmjF.11.1090 GO:0006810 PMID:19240115 ISO GeneDB:Tb11.02.4090 P palmitoyl acyltransferase 7, putative LmjF11.1090 transcript taxon:347515 20110817 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.11.1080:mRNA LmjF.11.1080 GO:0006810 PMID:19240115 ISO GeneDB:Tb11.02.4090 P palmitoyl acyltransferase 7, putative LmjF11.1080 transcript taxon:347515 20110817 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.09.0640:mRNA LmjF.09.0640 GO:0006810 PMID:19240115 ISO GeneDB:Tb11.01.4490 P palmitoyl acyltransferase 5, putative LmjF09.0640 transcript taxon:347515 20110725 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.32.1960:mRNA LmjF.32.1960 GO:0008152 GO_REF:0000002 ISS P 1-acyl-sn-glycerol-3-phosphateacyltransferase-like protein, putative LmjF32.1960 transcript taxon:347515 20181023 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.32.0390:mRNA Rpn8 GO:0016049 GO_REF:0000024 ISO GeneDB:Tb927.10.14530 P 19S proteasome non-atpase subunit 8 LmjF32.0390 transcript taxon:347515 20090731 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.13.0650:mRNA PAT6 GO:0006810 GO_REF:0000002 ISO GeneDB:Tb11.02.1710 P palmitoyl acyltransferase 6, putative LmjF13.0650 transcript taxon:347515 20110725 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.03.0160:mRNA ABCF1 GO:0043492 PMID:17030997 ISM F ATP-binding cassette protein subfamily F, member 1, putative LmjF03.0160 transcript taxon:347515 20090608 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.25.0960:mRNA TUBG GO:0016049 GO_REF:0000024 ISO GeneDB:Tb927.3.910 P tubulin gamma chain LmjF25.0960 transcript taxon:347515 20141210 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.28.1890:mRNA LmjF.28.1890 GO:0006810 PMID:19240115 ISO GeneDB:Tb11.01.0810 P palmitoyl acyltransferase 4, putative LmjF28.1890 transcript taxon:347515 20110802 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.21.1080:mRNA CRK1 GO:0007049 GO_REF:0000002 ISO GeneDB:TcCLB.504181.40 P cdc2-related kinase 1 LmjF21.1080 transcript taxon:347515 20170303 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.22.1350.1:mRNA LmjF.22.1350 GO:0006810 GO_REF:0000024 ISO GeneDB:Tb927.7.3350 P palmitoyl acyltransferase 11, putative LmjF22.1350 transcript taxon:347515 20110802 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.23.1420:mRNA LmjF.23.1420 GO:0006810 PMID:19240115 ISO GeneDB:Tb927.8.3400 P palmitoyl acyltransferase 12, putative LmjF23.1420 transcript taxon:347515 20110802 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.36.0150:mRNA LmjF.36.0150 GO:0008152 GO_REF:0000011 ISM InterPro:IPR001345 P 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatas, putative LmjF36.0150 transcript taxon:347515 20090731 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.21.1400:mRNA LmjF.21.1400 GO:0006810 PMID:19240115 ISO GeneDB:Tb927.10.690 P palmitoyl acyltransferase 3, putative LmjF21.1400 transcript taxon:347515 20110620 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.34.0650:mRNA RPN11 GO:0016049 GO_REF:0000024 ISO GeneDB:Tb927.10.2980 P proteasome regulatory non-ATPase subunit 11, putative LmjF34.0650 transcript taxon:347515 20090731 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.25.0530:mRNA ABCT GO:0006810 GO_REF:0000024 ISS Pfam:PF00005 P ABC transporter, mitochondrial, putative LmjF25.0530 transcript taxon:347515 20140507 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.31.0540:mRNA GAT1 GO:0005215 PMID:16754359 ISO GeneDB:Tb927.4.4050 F glycosomal transporter (GAT1), putative LmjF31.0540 transcript taxon:347515 20120823 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.28.0220:mRNA LmjF.28.0220 GO:0006810 PMID:19240115 ISO GeneDB:Tb11.02.5260 P palmitoyl acyltransferase 9, putative LmjF28.0220 transcript taxon:347515 20110725 GeneDB
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- GeneDB LmjF.04.0520:mRNA LmjF.04.0520 GO:0006810 PMID:19240115 ISS P palmitoyl acyltransferase 1, putative LmjF04.0520 transcript taxon:347515 20181023 GeneDB

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

• total: 0

gorule-0000013

Taxon-appropriate annotation check

• total: 10

Messages

• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- GeneDB LmjF.34.1580:mRNA MCA5 GO:0008631 PMID:17107676 IGI P amastin-like surface protein, putative LmjF34.1580 transcript taxon:347515 20110506 GeneDB
• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- GeneDB LmjF.36.1060:mRNA NLP GO:0031555 GO_REF:0000024 ISO GeneDB:Tb927.10.5450 P ISWI complex protein LmjF36.1060 transcript taxon:347515 20101117 GeneDB
• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- GeneDB LmjF.36.6280:mRNA GT3 GO:0070258 GO_REF:0000002 ISO GeneDB:LmxM.36.6280 C glucose transporter 3 LmjF36.6280 transcript taxon:347515 20131112 GeneDB
• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- GeneDB LmjF.26.2660:mRNA NUP92 GO:0005816 GO_REF:0000101 ISO GeneDB:Tb927.9.1340 C Myosin-like protein 2 MLP2|LmjF26.2660 transcript taxon:347515 20170221 GeneDB
• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- GeneDB LmjF.34.1580:mRNA MCA5 GO:0006915 PMID:17107676 IGI P amastin-like surface protein, putative LmjF34.1580 transcript taxon:347515 20110506 GeneDB
• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- GeneDB LmjF.28.2030:mRNA LmjF.28.2030 GO:0097190 GO_REF:0000012 ISA UniProtKB:NDUAD_HUMAN P NADH dehydrogenase subunit NB6M, putative LmjF28.2030 transcript taxon:347515 20140609 GeneDB
• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- GeneDB LmjF.35.1580:mRNA MCA5 GO:0006915 PMID:17107676 IGI P metacaspase LmjF35.1580 transcript taxon:347515 20110506 GeneDB
• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- GeneDB LmjF.36.6290:mRNA GT2 GO:0070258 GO_REF:0000002 ISO GeneDB:LmxM.36.6290 C glucose transporter 2 LmjF36.6290 transcript taxon:347515 20131112 GeneDB
• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- GeneDB LmjF.35.1580:mRNA MCA5 GO:0008631 PMID:17107676 IGI P metacaspase LmjF35.1580 transcript taxon:347515 20110506 GeneDB
• WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- GeneDB LmjF.36.3780:mRNA SPB1 GO:0044732 GO_REF:0000024 ISO GeneDB:Tb927.11.9690 C Spindle pole body protein 1, putative LmjF36.3780 transcript taxon:347515 20180627 GeneDB

gorule-0000015

Dual species taxon check

• total: 0

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 4

Messages

• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- GeneDB LmjF.32.1590:mRNA LmjF.32.1590 GO:0005524 PMID:19646907 IC F DNA repair and recombination protein, mitochondrial precursor, putative LmjF32.1590 transcript taxon:347515 20110829 GeneDB
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- GeneDB LmjF.18.0900:mRNA LmjF.18.0900 GO:0035268 PMID:14973778 IC P dolichyl-P-Man:GDP-ManGlcNAc2-PP-dolichyl beta-1,4-mannosyltransferase, putative LmjF18.0900 transcript taxon:347515 20100823 GeneDB
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- GeneDB LmjF.32.1590:mRNA LmjF.32.1590 GO:0000287 PMID:19646907 IC F DNA repair and recombination protein, mitochondrial precursor, putative LmjF32.1590 transcript taxon:347515 20110829 GeneDB
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- GeneDB LmjF.34.3590:mRNA LmjF.34.3590 GO:0005829 GO_REF:0000002 IC C phosphatidylinositol 4-kinase, putative LmjF34.3590 transcript taxon:347515 20100816 GeneDB

gorule-0000017

IDA annotations must not have a With/From entry

• total: 0

gorule-0000018

IPI annotations require a With/From entry

• total: 1

Messages

• WARNING - Violates GO Rule: GORULE:0000018: IPI annotations require a With/From entry -- GeneDB LmjF.36.0700:mRNA LmjF.36.0700 GO:0031019 PMID:20018860 IPI C MP18 RNA editing complex protein, putative LmjF36.0700 transcript taxon:347515 20100205 GeneDB

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 48

Messages

• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:1902361) -- GeneDB LmjF.01.0335:mRNA MPC1 GO:1902361 GO_REF:0000024 ISO GeneDB:Tb927.9.3780 P Mitochondrial pyruvate carrier 1 LmjF01.0335 transcript taxon:347515 20160725 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004004) -- GeneDB LmjF.01.0780:mRNA EIF4A1 GO:0004004 GO_REF:0000024 ISO GeneDB:LinJ.01.0790 F Eukaryotic initiation factor 4A-1 LmjF01.0780 transcript taxon:347515 20090402 GeneDB
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0052106) -- GeneDB LmjF.11.0610:mRNA LmjF.11.0610 GO:0052106 GO_REF:0000024 ISO GeneDB:Tb927.11.6600 P conserved protein, unknown function LmjF11.0610 transcript taxon:347515 20140108 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043623) -- GeneDB LmjF.29.1820:mRNA LmjF.29.1820 GO:0043623 GO_REF:0000002 ISO GeneDB:Tb927.3.4380 P Tob55, putative LmjF29.1820 transcript taxon:347515 20090617 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015758) -- GeneDB LmjF.36.6280:mRNA GT3 GO:0015758 GO_REF:0000002 ISO GeneDB:LmxM.36.6280 P glucose transporter 3 LmjF36.6280 transcript taxon:347515 20131112 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0032054) -- GeneDB LmjF.29.0510:mRNA LmjF.29.0510 GO:0032054 PMID:20460437 ISO GeneDB:LinJ.29.0520 P ADF/Cofilin LmjF29.0510 transcript taxon:347515 20100720 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015238) -- GeneDB LmjF.31.0020:mRNA AQP1 GO:0015238 PMID:20067981 IDA F Aquaglyceroporin 1 LmjF31.0020 transcript taxon:347515 20100415 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004003) -- GeneDB LmjF.11.0330:mRNA LmjF.11.0330 GO:0004003 PMID:20042610 ISO GeneDB:Tb11.02.4730 F PIF1 helicase-like protein, putative LmjF11.0330 transcript taxon:347515 20110822 GeneDB
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0052106) -- GeneDB LmjF.33.1700:mRNA ISWI GO:0052106 GO_REF:0000024 ISO GeneDB:Tb927.2.1810 P ISWI complex protein LmjF33.1700 transcript taxon:347515 20140108 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0030529) -- GeneDB LmjF.32.0020:mRNA LmjF.32.0020 GO:0030529 GO_REF:0000002 ISA UniProtKB:BFR1_YEAST C nuclear segregation protein, putative LmjF32.0020 transcript taxon:347515 20130911 GeneDB
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0052106) -- GeneDB LmjF.34.4050:mRNA LmjF.34.4050 GO:0052106 PMID:24336212 ISO GeneDB:Tb927.4.670 P conserved protein, unknown function LmjF34.4050 transcript taxon:347515 20140108 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015784) -- GeneDB LmjF.34.3120:mRNA LPG2 GO:0015784 PMID:9013638 IMP P lipophosphoglycan biosynthetic protein (lpg2) LmjF34.3120 transcript taxon:347515 20100616 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0007067) -- GeneDB LmjF.26.0200:mRNA LmjF.26.0200 GO:0007067 GO_REF:0000002 ISO GeneDB:Tb927.7.1710 P eukaryotic peptide chain release factor subunit 1, putative LmjF26.0200 transcript taxon:347515 20120725 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015238) -- GeneDB LmjF.31.0020:mRNA AQP1 GO:0015238 PMID:15138256 IMP F Aquaglyceroporin 1 LmjF31.0020 transcript taxon:347515 20131121 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0030529) -- GeneDB LmjF.04.1170:mRNA DRBD3 GO:0030529 GO_REF:0000024 ISO GeneDB:Tb927.9.8740 C Double RNA binding domain protein 3 PTB1|LmjF04.1170 transcript taxon:347515 20130822 GeneDB
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0052106) -- GeneDB LmjF.29.2020:mRNA LmjF.29.2020 GO:0052106 GO_REF:0000002 ISO GeneDB:Tb927.3.4560 P SNF1-related protein kinase catalytic subunit alpha, putative LmjF29.2020 transcript taxon:347515 20140108 GeneDB
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0052106) -- GeneDB LmjF.13.0160:mRNA PKA-R GO:0052106 GO_REF:0000024 ISO GeneDB:Tb927.11.4610 P protein kinase A regulatory subunit LmjF13.0160|FM458 transcript taxon:347515 20140108 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015758) -- GeneDB LmjF.36.6300:mRNA GT1 GO:0015758 GO_REF:0000002 ISO GeneDB:LmxM.36.6300 P glucose transporter 1 LmjF36.6300 transcript taxon:347515 20131112 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015684) -- GeneDB LmjF.31.3060:mRNA LIT1-1 GO:0015684 PMID:17000865 ISO GeneDB:LmxM.30.3060 P ferrous iron transport protein, putative LmjF31.3060 transcript taxon:347515 20111108 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043566) -- GeneDB LmjF.09.1480:mRNA JBP1 GO:0043566 GO_REF:0000024 ISO UniProtKB:Q9U6M1 F Thymine dioxygenase JBP1 LmjF09.1480 transcript taxon:347515 20160126 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:1902361) -- GeneDB LmjF.14.1460:mRNA MPC2 GO:1902361 GO_REF:0000024 ISO GeneDB:Tb927.7.3520 P Mitochondrial pyruvate carrier 2 LmjF14.1460 transcript taxon:347515 20160725 GeneDB
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0052106) -- GeneDB LmjF.02.0570:mRNA LmjF.02.0570 GO:0052106 GO_REF:0000002 ISO GeneDB:Tb927.2.2720 P protein kinase, putative LmjF02.0570 transcript taxon:347515 20140108 GeneDB
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0052106) -- GeneDB LmjF.01.0460:mRNA LmjF.01.0460 GO:0052106 GO_REF:0000002 ISO GeneDB:Tb927.9.4080 P conserved protein LmjF01.0460 transcript taxon:347515 20140108 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004003) -- GeneDB LmjF.11.0320:mRNA PIF2 GO:0004003 GO_REF:0000002 ISO GeneDB:Tb927.11.6900 F DNA repair and recombination helicase protein PIF2, putative LmjF11.0320 transcript taxon:347515 20110824 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004003) -- GeneDB LmjF.28.2530:mRNA LmjF.28.2530 GO:0004003 PMID:19646907 ISO GeneDB:Tb11.01.3660 F DNA repair and recombination helicase protein PIF3, putative LmjF28.2530 transcript taxon:347515 20110829 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0044822) -- GeneDB LmjF.35.3540:mRNA PNO1 GO:0044822 GO_REF:0000012 ISA UniProtKB:PNO1_HUMAN F pre-rRNA-processing protein PNO1, putative LmjF35.3540 transcript taxon:347515 20140731 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015238) -- GeneDB LmjF.10.0710:mRNA AAT20.1 GO:0015238 PMID:20851719 IMP F amino acid permease 24, putative AAP24.1|LmjF10.0710 transcript taxon:347515 20100928 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0032054) -- GeneDB LmjF.35.4280:mRNA SAS6 GO:0032054 GO_REF:0000024 ISO GeneDB:Tb927.9.10550 P Spindle assembly abnormal protein 6 homolog LmjF35.4280|SASS6 transcript taxon:347515 20160726 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004003) -- GeneDB LmjF.32.1590:mRNA LmjF.32.1590 GO:0004003 PMID:19646907 IDA F DNA repair and recombination protein, mitochondrial precursor, putative LmjF32.1590 transcript taxon:347515 20110829 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0040023) -- GeneDB LmjF.27.1760:mRNA tbccd1 GO:0040023 GO_REF:0000002 ISO GeneDB:Tb927.11.2440 P Tubulin cofactor C domain-containing protein 1, putative LmjF27.1760 transcript taxon:347515 20140414 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004004) -- GeneDB LmjF.01.0770:mRNA EIF4A1 GO:0004004 GO_REF:0000024 ISO GeneDB:LinJ.01.0790 F Eukaryotic initiation factor 4A-1 LmjF01.0770 transcript taxon:347515 20090402 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0030529) -- GeneDB LmjF.27.0130:mRNA LmjF.27.0130 GO:0030529 PMID:19247446 ISO GeneDB:Tb927.3.720 C WW domain/Zinc finger C-x8-C-x5-C-x3-H type (and similar), putative LmjF27.0130 transcript taxon:347515 20090715 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004003) -- GeneDB LmjF.07.1020:mRNA LmjF.07.1020 GO:0004003 PMID:19646907 ISO GeneDB:Tb927.8.700 F DNA repair and recombination helicase protein PIF7, putative LmjF07.1020 transcript taxon:347515 20110829 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0032054) -- GeneDB LmjF.29.2210:mRNA LRTP GO:0032054 GO_REF:0000024 ISO GeneDB:Tb927.3.4730 P leucine-rich repeat-containing protein LmjF29.2210 transcript taxon:347515 20141209 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0033676) -- GeneDB LmjF.28.0550:mRNA RAD51 GO:0033676 PMID:11420107 IDA F DNA repair protein RAD51, putative LmjF28.0550 transcript taxon:347515 20130913 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015758) -- GeneDB LmjF.36.6290:mRNA GT2 GO:0015758 GO_REF:0000002 ISO GeneDB:LmxM.36.6290 P glucose transporter 2 LmjF36.6290 transcript taxon:347515 20131112 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015238) -- GeneDB LmjF.10.0720:mRNA AAT20.3 GO:0015238 PMID:20851719 IMP F amino acid permease 24, putative LmjF10.0720|AAP24.3 transcript taxon:347515 20100928 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001104) -- GeneDB LmjF.12.0350:mRNA LmjF.12.0350 GO:0001104 GO_REF:0000002 ISO GeneDB:Tb927.6.850 F CCR4-NOT transcription complex subunit 2, putative LmjF12.0350 transcript taxon:347515 20120319 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0007067) -- GeneDB LmjF.36.1640:mRNA UMSBP GO:0007067 GO_REF:0000024 ISO GeneDB:Tb927.10.6060 P universal minicircle sequence binding protein, putative LmjF36.1640 transcript taxon:347515 20141124 GeneDB
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042624) -- GeneDB LmjF.19.0800:mRNA ABCF2 GO:0042624 GO_REF:0000002 ISO GeneDB:Tb927.10.15530 F ABC transport system ATP-binding protein, putative LmjF19.0800 transcript taxon:347515 20120807 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015238) -- GeneDB LmjF.10.0715:mRNA AAT20.2 GO:0015238 PMID:20851719 IMP F amino acid permease 24, putative LmjF10.0715 transcript taxon:347515 20100928 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043234) -- GeneDB LmjF.08.1170:mRNA MRB3010 GO:0043234 GO_REF:0000024 ISO GeneDB:Tb927.5.3010 C MRB1 complex subunit MRB3010 LmjF08.1170 transcript taxon:347515 20150105 GeneDB
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0050983) -- GeneDB LmjF.34.0330:mRNA DHS34 GO:0050983 PMID:19880510 IDA P deoxyhypusine synthase LmjF34.0330 transcript taxon:347515 20101116 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006461) -- GeneDB LmjF.29.1820:mRNA LmjF.29.1820 GO:0006461 PMID:20659504 ISO GeneDB:Tb927.3.4380 P Tob55, putative LmjF29.1820 transcript taxon:347515 20100805 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004003) -- GeneDB LmjF.21.1190:mRNA LmjF.21.1190 GO:0004003 PMID:19646907 ISO GeneDB:Tb927.10.910 F DNA repair and recombination helicase protein PIF6, putative LmjF21.1190 transcript taxon:347515 20110824 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043142) -- GeneDB LmjF.28.0550:mRNA RAD51 GO:0043142 PMID:11420107 IDA F DNA repair protein RAD51, putative LmjF28.0550 transcript taxon:347515 20130913 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004004) -- GeneDB LmjF.36.0870:mRNA LmjF.36.0870 GO:0004004 GO_REF:0000012 ISA UniProtKB:Q14562 F DEAH-box RNA helicase, putative LmjF36.0870 transcript taxon:347515 20090731 GeneDB
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0007126) -- GeneDB LmjF.32.0020:mRNA LmjF.32.0020 GO:0007126 GO_REF:0000002 ISA UniProtKB:BFR1_YEAST P nuclear segregation protein, putative LmjF32.0020 transcript taxon:347515 20130911 GeneDB

gorule-0000027

Each identifier in GAF is valid

• total: 1

Messages

• ERROR - Invalid identifier: GORULE:0000027: contains non letter, non number character, or spaces (GeneDB: Tb927.10.11720) -- GeneDB LmjF.33.1100:mRNA LmjF.33.1100 GO:0005634 GO_REF:0000024 ISO GeneDB: Tb927.10.11720 C CW-type Zinc Finger, putative LmjF33.1100 transcript taxon:347515 20180704 GeneDB

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

• total: 0

gorule-0000029

All IEAs over a year old are removed

• total: 0

gorule-0000030

Deprecated GO_REFs are not allowed

• total: 0

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

• total: 0

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

• total: 0

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

• total: 0

gorule-0000043

Check for valid combination of evidence code and GO_REF

• total: 0

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

• total: 4

Messages

• WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- GeneDB LmjF.23.0380:mRNA ABCG5 GO:0042803 PMID:21255121 ISO GeneDB:LinJ.23.0430 F ATP-binding cassette protein subfamily G, member 5 LmjF23.0380 transcript taxon:347515 20110131 GeneDB
• WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- GeneDB LmjF.19.0140:mRNA AKB1 GO:0042803 GO_REF:0000024 ISO GeneDB:Tb927.10.14770 F Associated kinase of Tb14-3-3, putative LmjF19.0140 transcript taxon:347515 20150708 GeneDB
• WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- GeneDB LmjF.35.1040:mRNA ZC3H11 NOT GO:0042803 GO_REF:0000024 ISO GeneDB:Tb927.5.810 F zinc finger CCCH domain containing protein 11 LmjF35.1040 transcript taxon:347515 20150612 GeneDB
• WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- GeneDB LmjF.08.1200:mRNA MIX GO:0042803 PMID:21465610 IDA F MIX protein LmjF08.1200 transcript taxon:347515 20110712 GeneDB

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

• total: 0

other

• total: 0

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #6307 annotations in 6315 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 25
148 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.22.1350.2:mRNA LmjF.22.1350 GO:0006810 GO_REF:0000024 ISO GeneDB:Tb927.7.3350 P palmitoyl acyltransferase 11, putative LmjF22.1350 transcript taxon:347515 20110802 GeneDB
342 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.19.0800:mRNA ABCF2 GO:0006810 GO_REF:0000002 ISS P ABC transport system ATP-binding protein, putative LmjF19.0800 transcript taxon:347515 20090731 GeneDB
531 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.33.0230:mRNA LmjF.33.0230 GO:0006810 PMID:19240115 ISO GeneDB:Tb927.10.10800 P palmitoyl acyltransferase 2, putative LmjF33.0230 transcript taxon:347515 20110620 GeneDB
700 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.25.2280:mRNA LmjF.25.2280 GO:0006810 PMID:19240115 ISO GeneDB:Tb927.3.2400 P palmitoyl acyltransferase 10, putative LmjF25.2280 transcript taxon:347515 20110802 GeneDB
777 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.21.1390:mRNA LmjF.21.1390 GO:0006810 PMID:19240115 ISO GeneDB:Tb927.10.690 P palmitoyl acyltransferase 3, putative LmjF21.1390 transcript taxon:347515 20110620 GeneDB
936 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.02.0110:mRNA LmjF.02.0110 GO:0006810 GO_REF:0000012 ISA UniProtKB:O43592 P tRNA exportin, putative LmjF02.0110 transcript taxon:347515 20140507 GeneDB
1463 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.11.1090:mRNA LmjF.11.1090 GO:0006810 PMID:19240115 ISO GeneDB:Tb11.02.4090 P palmitoyl acyltransferase 7, putative LmjF11.1090 transcript taxon:347515 20110817 GeneDB
1603 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.11.1080:mRNA LmjF.11.1080 GO:0006810 PMID:19240115 ISO GeneDB:Tb11.02.4090 P palmitoyl acyltransferase 7, putative LmjF11.1080 transcript taxon:347515 20110817 GeneDB
1714 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.09.0640:mRNA LmjF.09.0640 GO:0006810 PMID:19240115 ISO GeneDB:Tb11.01.4490 P palmitoyl acyltransferase 5, putative LmjF09.0640 transcript taxon:347515 20110725 GeneDB
1861 GO_AR:0000008 Warning Do not annotate to: GO:0008152 'metabolic process' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate GeneDB LmjF.32.1960:mRNA LmjF.32.1960 GO:0008152 GO_REF:0000002 ISS P 1-acyl-sn-glycerol-3-phosphateacyltransferase-like protein, putative LmjF32.1960 transcript taxon:347515 20181023 GeneDB
1943 GO_AR:0000008 Warning Do not annotate to: GO:0016049 'cell growth' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.32.0390:mRNA Rpn8 GO:0016049 GO_REF:0000024 ISO GeneDB:Tb927.10.14530 P 19S proteasome non-atpase subunit 8 LmjF32.0390 transcript taxon:347515 20090731 GeneDB
1980 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.13.0650:mRNA PAT6 GO:0006810 GO_REF:0000002 ISO GeneDB:Tb11.02.1710 P palmitoyl acyltransferase 6, putative LmjF13.0650 transcript taxon:347515 20110725 GeneDB
2136 GO_AR:0000008 Warning Do not annotate to: GO:0043492 'ATPase activity, coupled to movement of substances' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.03.0160:mRNA ABCF1 GO:0043492 PMID:17030997 ISM F ATP-binding cassette protein subfamily F, member 1, putative LmjF03.0160 transcript taxon:347515 20090608 GeneDB
2632 GO_AR:0000008 Warning Do not annotate to: GO:0016049 'cell growth' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.25.0960:mRNA TUBG GO:0016049 GO_REF:0000024 ISO GeneDB:Tb927.3.910 P tubulin gamma chain LmjF25.0960 transcript taxon:347515 20141210 GeneDB
3487 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.28.1890:mRNA LmjF.28.1890 GO:0006810 PMID:19240115 ISO GeneDB:Tb11.01.0810 P palmitoyl acyltransferase 4, putative LmjF28.1890 transcript taxon:347515 20110802 GeneDB
3695 GO_AR:0000008 Warning Do not annotate to: GO:0007049 'cell cycle' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate GeneDB LmjF.21.1080:mRNA CRK1 GO:0007049 GO_REF:0000002 ISO GeneDB:TcCLB.504181.40 P cdc2-related kinase 1 LmjF21.1080 transcript taxon:347515 20170303 GeneDB
3749 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.22.1350.1:mRNA LmjF.22.1350 GO:0006810 GO_REF:0000024 ISO GeneDB:Tb927.7.3350 P palmitoyl acyltransferase 11, putative LmjF22.1350 transcript taxon:347515 20110802 GeneDB
3786 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.23.1420:mRNA LmjF.23.1420 GO:0006810 PMID:19240115 ISO GeneDB:Tb927.8.3400 P palmitoyl acyltransferase 12, putative LmjF23.1420 transcript taxon:347515 20110802 GeneDB
3870 GO_AR:0000008 Warning Do not annotate to: GO:0008152 'metabolic process' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate GeneDB LmjF.36.0150:mRNA LmjF.36.0150 GO:0008152 GO_REF:0000011 ISM InterPro:IPR001345 P 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatas, putative LmjF36.0150 transcript taxon:347515 20090731 GeneDB
4331 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.21.1400:mRNA LmjF.21.1400 GO:0006810 PMID:19240115 ISO GeneDB:Tb927.10.690 P palmitoyl acyltransferase 3, putative LmjF21.1400 transcript taxon:347515 20110620 GeneDB
4338 GO_AR:0000008 Warning Do not annotate to: GO:0016049 'cell growth' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.34.0650:mRNA RPN11 GO:0016049 GO_REF:0000024 ISO GeneDB:Tb927.10.2980 P proteasome regulatory non-ATPase subunit 11, putative LmjF34.0650 transcript taxon:347515 20090731 GeneDB
4749 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.25.0530:mRNA ABCT GO:0006810 GO_REF:0000024 ISS Pfam:PF00005 P ABC transporter, mitochondrial, putative LmjF25.0530 transcript taxon:347515 20140507 GeneDB
4922 GO_AR:0000008 Warning Do not annotate to: GO:0005215 'transporter activity' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.31.0540:mRNA GAT1 GO:0005215 PMID:16754359 ISO GeneDB:Tb927.4.4050 F glycosomal transporter (GAT1), putative LmjF31.0540 transcript taxon:347515 20120823 GeneDB
4989 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.28.0220:mRNA LmjF.28.0220 GO:0006810 PMID:19240115 ISO GeneDB:Tb11.02.5260 P palmitoyl acyltransferase 9, putative LmjF28.0220 transcript taxon:347515 20110725 GeneDB
5284 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GeneDB LmjF.04.0520:mRNA LmjF.04.0520 GO:0006810 PMID:19240115 ISS P palmitoyl acyltransferase 1, putative LmjF04.0520 transcript taxon:347515 20181023 GeneDB
#------------

GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004029 aldehyde dehydrogenase (NAD+) activity ISO
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity ISM
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004527 exonuclease activity ISM
GO:0016310 phosphorylation AnnotationPropagation P GO:0051736 ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity ISA
GO:0005623 cell AnnotationPropagation C GO:0006882 cellular zinc ion homeostasis ISO
GO:0005623 cell AnnotationPropagation C GO:0045454 cell redox homeostasis ISO
GO:0005739 mitochondrion AnnotationPropagation C GO:0006390 mitochondrial transcription ISO
GO:0016310 phosphorylation AnnotationPropagation P GO:0008887 glycerate kinase activity RCA
GO:0032774 RNA biosynthetic process AnnotationPropagation P GO:0003899 DNA-directed 5'-3' RNA polymerase activity ISO
GO:0097502 mannosylation AnnotationPropagation P GO:0004584 dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity ISO
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004519 endonuclease activity ISO
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:1903830 magnesium ion transmembrane transport AnnotationPropagation P GO:0015095 magnesium ion transmembrane transporter activity EXP
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0004842 ubiquitin-protein transferase activity ISA
GO:0005929 cilium AnnotationPropagation C GO:0035720 intraciliary anterograde transport ISO
GO:0097502 mannosylation AnnotationPropagation P GO:0000009 alpha-1,6-mannosyltransferase activity ISO
GO:0015755 fructose transmembrane transport AnnotationPropagation P GO:0005353 fructose transmembrane transporter activity ISO
GO:0022900 electron transport chain AnnotationPropagation P GO:0008121 ubiquinol-cytochrome-c reductase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0070012 oligopeptidase activity ISO
GO:0006657 CDP-choline pathway AnnotationPropagation P GO:0004142 diacylglycerol cholinephosphotransferase activity ISO
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0004674 protein serine/threonine kinase activity ISM
GO:0035335 peptidyl-tyrosine dephosphorylation AnnotationPropagation P GO:0004725 protein tyrosine phosphatase activity IDA
GO:0005623 cell AnnotationPropagation C GO:0045454 cell redox homeostasis ISO
GO:0097502 mannosylation AnnotationPropagation P GO:0000026 alpha-1,2-mannosyltransferase activity ISO
GO:0005929 cilium AnnotationPropagation C GO:0035721 intraciliary retrograde transport ISO
GO:1904659 glucose transmembrane transport AnnotationPropagation P GO:0055056 D-glucose transmembrane transporter activity ISO
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity ISO
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity ISO
GO:0032774 RNA biosynthetic process AnnotationPropagation P GO:0003899 DNA-directed 5'-3' RNA polymerase activity ISM
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008398 sterol 14-demethylase activity ISO
GO:0070988 demethylation AnnotationPropagation P GO:0008398 sterol 14-demethylase activity ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015205 nucleobase transmembrane transporter activity IDA
GO:0015851 nucleobase transport AnnotationPropagation P GO:0015205 nucleobase transmembrane transporter activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0004197 cysteine-type endopeptidase activity ISM
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0003678 DNA helicase activity ISO
GO:0000413 protein peptidyl-prolyl isomerization AnnotationPropagation P GO:0003755 peptidyl-prolyl cis-trans isomerase activity ISO
GO:0006508 proteolysis AnnotationPropagation P GO:0008234 cysteine-type peptidase activity EXP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004155 6,7-dihydropteridine reductase activity IDA
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0016311 dephosphorylation AnnotationPropagation P GO:0008254 3'-nucleotidase activity ISO
GO:0034968 histone lysine methylation AnnotationPropagation P GO:0018024 histone-lysine N-methyltransferase activity ISO
GO:0005739 mitochondrion AnnotationPropagation C GO:0034551 mitochondrial respiratory chain complex III assembly ISO
GO:0005929 cilium AnnotationPropagation C GO:0035721 intraciliary retrograde transport ISO
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0051920 peroxiredoxin activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0051920 peroxiredoxin activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0004674 protein serine/threonine kinase activity ISM
GO:0006508 proteolysis AnnotationPropagation P GO:0008234 cysteine-type peptidase activity EXP
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:1903506 regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0003712 transcription coregulator activity ISO
GO:0097502 mannosylation AnnotationPropagation P GO:0000026 alpha-1,2-mannosyltransferase activity ISO
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015506 nucleoside:proton symporter activity ISO
GO:1901642 nucleoside transmembrane transport AnnotationPropagation P GO:0015506 nucleoside:proton symporter activity ISO
GO:0016310 phosphorylation AnnotationPropagation P GO:0050201 fucokinase activity IMP
GO:0046854 phosphatidylinositol phosphorylation AnnotationPropagation P GO:0016307 phosphatidylinositol phosphate kinase activity ISO
GO:0005623 cell AnnotationPropagation C GO:0006874 cellular calcium ion homeostasis ISO
GO:0032774 RNA biosynthetic process AnnotationPropagation P GO:0003899 DNA-directed 5'-3' RNA polymerase activity ISO
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016491 oxidoreductase activity ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0015761 mannose transmembrane transport AnnotationPropagation P GO:0015578 mannose transmembrane transporter activity ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0006470 protein dephosphorylation AnnotationPropagation P GO:0004721 phosphoprotein phosphatase activity ISA
GO:0006508 proteolysis AnnotationPropagation P GO:0008241 peptidyl-dipeptidase activity ISO
GO:0000413 protein peptidyl-prolyl isomerization AnnotationPropagation P GO:0003755 peptidyl-prolyl cis-trans isomerase activity ISO
GO:0046854 phosphatidylinositol phosphorylation AnnotationPropagation P GO:0004430 1-phosphatidylinositol 4-kinase activity ISO
GO:0016310 phosphorylation AnnotationPropagation P GO:0004305 ethanolamine kinase activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0004181 metallocarboxypeptidase activity ISO
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016972 thiol oxidase activity ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0046854 phosphatidylinositol phosphorylation AnnotationPropagation P GO:0016303 1-phosphatidylinositol-3-kinase activity ISO
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process AnnotationPropagation P GO:0016303 1-phosphatidylinositol-3-kinase activity ISO
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0051920 peroxiredoxin activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0051920 peroxiredoxin activity IDA
GO:0005929 cilium AnnotationPropagation C GO:0035720 intraciliary anterograde transport ISO
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003885 D-arabinono-1,4-lactone oxidase activity ISO
GO:0006508 proteolysis AnnotationPropagation P GO:0070012 oligopeptidase activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004529 exodeoxyribonuclease activity ISM
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004529 exodeoxyribonuclease activity ISM
GO:0072334 UDP-galactose transmembrane transport AnnotationPropagation P GO:0005459 UDP-galactose transmembrane transporter activity IGI
GO:0016311 dephosphorylation AnnotationPropagation P GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008137 NADH dehydrogenase (ubiquinone) activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0004674 protein serine/threonine kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004657 proline dehydrogenase activity ISM
GO:0016311 dephosphorylation AnnotationPropagation P GO:0042577 lipid phosphatase activity IDA
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0017116 single-stranded DNA helicase activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0004222 metalloendopeptidase activity ISO
GO:0035435 phosphate ion transmembrane transport AnnotationPropagation P GO:0015321 sodium-dependent phosphate transmembrane transporter activity ISO
GO:0044341 sodium-dependent phosphate transport AnnotationPropagation P GO:0015321 sodium-dependent phosphate transmembrane transporter activity ISO
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 protein transmembrane transporter activity ISA
GO:0006096 glycolytic process AnnotationPropagation P GO:0004743 pyruvate kinase activity RCA
GO:0032774 RNA biosynthetic process AnnotationPropagation P GO:0003899 DNA-directed 5'-3' RNA polymerase activity ISO
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0004672 protein kinase activity ISO
GO:0097502 mannosylation AnnotationPropagation P GO:0000026 alpha-1,2-mannosyltransferase activity ISO
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004352 glutamate dehydrogenase (NAD+) activity IDA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0070588 calcium ion transmembrane transport AnnotationPropagation P GO:0015085 calcium ion transmembrane transporter activity ISO
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0050790 regulation of catalytic activity AnnotationPropagation P GO:0043763 UTP:glucose-1-phosphate uridylyltransferase regulator activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0016920 pyroglutamyl-peptidase activity IDA
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004527 exonuclease activity ISM
GO:0015798 myo-inositol transport AnnotationPropagation P GO:0005365 myo-inositol transmembrane transporter activity IDA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0005365 myo-inositol transmembrane transporter activity IDA
GO:0019722 calcium-mediated signaling AnnotationPropagation P GO:0005220 inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity ISO
GO:0051209 release of sequestered calcium ion into cytosol AnnotationPropagation P GO:0005220 inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity ISO
GO:0048016 inositol phosphate-mediated signaling AnnotationPropagation P GO:0005220 inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity ISO
GO:0035246 peptidyl-arginine N-methylation AnnotationPropagation P GO:0016274 protein-arginine N-methyltransferase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045174 glutathione dehydrogenase (ascorbate) activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0045174 glutathione dehydrogenase (ascorbate) activity IDA
GO:1901642 nucleoside transmembrane transport AnnotationPropagation P GO:0005337 nucleoside transmembrane transporter activity ISO
GO:0005929 cilium AnnotationPropagation C GO:0035735 intraciliary transport involved in cilium assembly ISO
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISM
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0030611 arsenate reductase activity IDA
GO:1903508 positive regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0003713 transcription coactivator activity ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0016301 kinase activity ISO
GO:0006508 proteolysis AnnotationPropagation P GO:0004198 calcium-dependent cysteine-type endopeptidase activity ISM