• Summary (original)
• Report (original)
• OWLTools check (original)
• Predictions (original)
• Predictions (experimental) (original)

GAF summary

Found 1362 annotations in 1370 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000007 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000007) IPI should not be used with catalytic activity molecular function terms, there is one violation with type Warning.

For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 15 violations with type Warning.

GAF Prediction Summary

Found 22 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-10-31/extensions/go-gaf.owl

Group: sgn - Dataset: sgn

SUMMARY

This report generated on 2019-11-02

• Associations: 1362
• Lines in file (incl headers): 1458
• Lines skipped: 96

Header From Original Association File

Contents

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000020

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000033

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

• total: 0

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

• total: 0

gorule-0000007

IPI should not be used with catalytic activity molecular function terms

• total: 1

Messages

• WARNING - Violates GO Rule: GORULE:0000007: IPI should not be used with catalytic activity molecular function terms -- SGN 5257 pmt GO:0030750 PMID:17221359 IPI NCBI_gi:86438859 F putrescine N-methyltransferase Solyc06g053510 gene taxon:4081 20090625 SGN

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 22

Messages

• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 364 c14 GO:0044428 PMID:11444695 IDA C cysteine protease CYP1 C14|tdi-65|Solyc12g088670 gene taxon:4081 20090612 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 364 c14 GO:0044434 PMID:11444695 IDA C cysteine protease CYP1 C14|tdi-65|Solyc12g088670 gene taxon:4081 20090612 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 1027 LeST1-1 GO:0044459 PMID:12937983 IDA C sulfate transporter 1 THT1-3|THT7-1|THT1-4|Solyc10g047170 gene taxon:4081 20090929 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 5291 amt1 GO:0044459 PMID:8755617 IDA C AMT1 Solyc09g090730 gene taxon:4081 20090929 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 5389 LeST1-2 GO:0044459 PMID:12937983 IDA C sulfate transporter 2 AF347614|Solyc12g056930 gene taxon:4081 20090929 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 17699 SlBCAT4 GO:0044434 PMID:20435740 IDA C SlBCAT4 Solyc03g043880 gene taxon:4081 20120131 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 110964 SlBCAT2 GO:0044429 PMID:20435740 IDA C SlBCAT2 Solyc07g021630 gene taxon:4081 20120130 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 68 SlIAA3 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA3 LeIAA3|IAA3|Solyc09g065850 gene taxon:4081 20141120 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 463 e GO:0006950 PMID:22314799 IEP P entire b|SlIAA9|iaa9|LeIAA4|IAA4|ctd1|Solyc04g076850|SlIAA4 gene taxon:4081 20141120 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 4506 Asr2 GO:0009628 PMID:17602312 IEP P Abscicic acid stress ripening 2 Solyc04g071580 gene taxon:4081 20080215 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 9403 SlMAPKKK1 GO:0006950 PMID:25036993 IDA P MAP kinase kinase kinase 1 Solyc01g005030|MAPKKK1 gene taxon:4081 20141103 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 20062 iaa14 GO:0009628 PMID:22314799 IDA P auxin-regulated IAA14 Solyc03g121060|SlIAA14 gene taxon:4081 20141121 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 22083 Asr_2 GO:0009628 PMID:17602312 IEP P Abscicic acid stress ripening 2 Solyc04g071580|Asr2 gene taxon:4081 20120509 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 26635 SlC3H43 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 43 Solyc06g054620|C3H43 gene taxon:4081 20150304 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 27917 SlC3H48 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 48 24870401|C3H48|Solyc06g082010 gene taxon:4081 20150304 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 28803 SlIAA20 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA20 SlIAA20|iaa20|Solyc07g019450 gene taxon:4081 20141121 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 29921 SlC3H50 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 50 Solyc07g053750|C3H50 gene taxon:4081 20150304 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 35249 SlIAA1 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA1 IAA1|Solyc09g083280 gene taxon:4081 20141124 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 40630 SlMAPKKK83 GO:0006950 PMID:25036993 IEP P MAP kinase kinase kinase 83 MAPKKK83|Solyc12g005360 gene taxon:4081 20141111 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 40851 SlC3H73 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 73 Solyc12g008660|C3H73 gene taxon:4081 20150304 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 40914 SlMAPKKK84 GO:0006950 PMID:25036993 IEP P MAP kinase kinase kinase 84 MAPKKK84|Solyc12g009340 gene taxon:4081 20141111 SGN
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- SGN 42691 SlC3H80 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 80 C3H80|Solyc12g089260 gene taxon:4081 20150304 SGN

gorule-0000011

ND annotations to root nodes only; and only root nodes can have the evidence code ND.

• total: 0

gorule-0000013

Taxon-appropriate annotation check

• total: 0

gorule-0000015

Dual species taxon check

• total: 0

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 6

Messages

• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 246 crtiso GO:0009536 PMID:11884678 IC C carotenoid isomerase tangerine|Solyc10g081650 gene taxon:4081 20070920 SGN
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 8265 SlSK GO:0005634 PMID:19533382 IC C SlSK Solyc07g055200 gene taxon:4081 20090730 SGN
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 1381 sw5 GO:0051607 PMID:11043474 IC NCBI_gi:15418708 P Spotted wilt resistance-5 Sw-5|Solyc09g098130.1.1 gene taxon:4081 20100107 SGN
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 5583 tg1 GO:0016120 SGN_ref:861 IC P test gene tg2|tg gene taxon:4081 20121115 SGN
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 8336 MSH2 GO:0006281 PMID:19690966 IC P DNA mismatch repair protein 2 gene taxon:4081 20100416 SGN
• ERROR - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column -- SGN 8337 MSH7 GO:0006281 PMID:19690966 IC P DNA mismatch repair protein 7 gene taxon:4081 20100416 SGN

gorule-0000017

IDA annotations must not have a With/From entry

• total: 0

gorule-0000018

IPI annotations require a With/From entry

• total: 0

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 93

Messages

• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044428) -- SGN 364 c14 GO:0044428 PMID:11444695 IDA C cysteine protease CYP1 C14|tdi-65|Solyc12g088670 gene taxon:4081 20090612 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044434) -- SGN 364 c14 GO:0044434 PMID:11444695 IDA C cysteine protease CYP1 C14|tdi-65|Solyc12g088670 gene taxon:4081 20090612 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044459) -- SGN 1027 LeST1-1 GO:0044459 PMID:12937983 IDA C sulfate transporter 1 THT1-3|THT7-1|THT1-4|Solyc10g047170 gene taxon:4081 20090929 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044459) -- SGN 5291 amt1 GO:0044459 PMID:8755617 IDA C AMT1 Solyc09g090730 gene taxon:4081 20090929 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044459) -- SGN 5389 LeST1-2 GO:0044459 PMID:12937983 IDA C sulfate transporter 2 AF347614|Solyc12g056930 gene taxon:4081 20090929 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044434) -- SGN 17699 SlBCAT4 GO:0044434 PMID:20435740 IDA C SlBCAT4 Solyc03g043880 gene taxon:4081 20120131 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0044429) -- SGN 110964 SlBCAT2 GO:0044429 PMID:20435740 IDA C SlBCAT2 Solyc07g021630 gene taxon:4081 20120130 SGN
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004872) -- SGN 662 Gr GO:0004872 PMID:15834010 IMP F green ripe gr|DQ372895|Solyc01g104340 gene taxon:4081 20071005 SGN
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004872) -- SGN 1046 Nr2 GO:0004872 PMID:15834010 IMP F Never ripe-2 Nr-2|Never-ripe|Solyc09g075440 gene taxon:4081 20071005 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0000988) -- SGN 8326 HSFA2 GO:0000988 PMID:19491106 IDA F heat stress transcription factor A2 gene taxon:4081 20120224 SGN
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0015684) -- SGN 253 chln GO:0015684 PMID:10359845 IMP NCBI_gi:4753800 P chloronerva Solyc01g100490 gene taxon:4081 20080702 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 8525 SlC3H1 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 1 C3H1|Solyc00g007330 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 8528 SlC3H2 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 2 Solyc00g007450|C3H2 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 8644 SlC3H3 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 3 Solyc00g012540|C3H3 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 9297 SlC3H4 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 4 Solyc00g198360|24870401|C3H4 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 9711 SlC3H5 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 5 C3H5|Solyc01g008170 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 9751 SlC3H6 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 6 Solyc01g008600|C3H6 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0075177) -- SGN 9783 SlCaM1 GO:0075177 PMID:23621884 IDA P Calmodulin 1 Solyc01g008950|Cam1 gene taxon:4081 20130610 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 10169 SlC3H7 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 7 Solyc01g014850|C3H7 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 11148 SlC3H8 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 8 Solyc01g067550|C3H8 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 11283 SlC3H9 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 9 Solyc01g073940|C3H9 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 11581 SlC3H10 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 10 C3H10|Solyc01g087030 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 11595 SlC3H11 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 11 C3H11|Solyc01g087170 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 11683 SlC3H12 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 12 Solyc01g088100|C3H12 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 12626 SlC3H13 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 13 Solyc01g100990|C3H13 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 12732 SlC3H14 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 14 C3H14|Solyc01g103090 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 13441 SlC3H15 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 15 Solyc01g110490|C3H15 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 13914 SlC3H16 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 16 Solyc02g021760|C3H16 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 14949 SlC3H17 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 17 Solyc02g070240|C3H17 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 15717 SlC3H18 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 18 C3H18|Solyc02g082110 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 15915 SlC3H19 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 19 Solyc02g084200|C3H19 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 15946 SlC3H20 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 20 Solyc02g084520|C3H20 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 16122 SlC3H21 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 21 C3H21|Solyc02g086430 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 16130 SlC3H22 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 22 C3H23|Solyc02g086510 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 17061 SlC3H23 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 23 C3H23|Solyc03g006350 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 17447 SlC3H24 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 24 C3H24|Solyc03g026350 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 18130 SlC3H25 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 25 24870401|C3H25|Solyc03g063200 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 18178 SlC3H26 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 26 Solyc03g063680|C3H26 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 19145 SlC3H27 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 27 Solyc03g111580|C3H27 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 19615 SlC3H28 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 28 Solyc03g116410|C3H28 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 19616 SlC3H29 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 29 Solyc03g116420|C3H29 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 19906 SlC3H30 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 30 Solyc03g119430|C3H30 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 20503 SlC3H31 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 31 Solyc04g008550|24870401|C3H31 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 21009 SlC3H32 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 32 C3H32|Solyc04g017710 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 21924 SlC3H33 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 33 Solyc04g057990|24870401|C3H33 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 22003 SlC3H34 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 34 Solyc04g064770|C3H34 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 22006 SlC3H35 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 35 Solyc04g064800|C3H35 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 23325 SlC3H36 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 36 Solyc05g008670|C3H36 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 23392 SlC3H37 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 37 Solyc05g009350|C3H37 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 24415 SlC3H38 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 38 Solyc05g032650|C3H38 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 25003 SlC3H39 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 39 Solyc05g052570|C3H39 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 25658 SlC3H40 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 40 Solyc06g008740|C3H40 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 25689 SlC3H41 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 41 Solyc06g009070|24870401|C3H41 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 26633 SlC3H42 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 42 Solyc06g054600|C3H42 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 26635 SlC3H43 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 43 Solyc06g054620|C3H43 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 26864 SlC3H44 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 44 Solyc06g063020|C3H44 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 27290 SlC3H45 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 45 Solyc06g069440|C3H45 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 27431 SlC3H46 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 46 Solyc06g071860|C3H46 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 27917 SlC3H48 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 48 24870401|C3H48|Solyc06g082010 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 29649 SlC3H49 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 49 Solyc07g047940|C3H49 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 29921 SlC3H50 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 50 Solyc07g053750|C3H50 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 30542 SlC3H51 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 51 Solyc07g065290|C3H51 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 32228 SlC3H52 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 52 Solyc08g068830|C3H52 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 33261 SlC3H53 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 53 C3H53|Solyc09g007230 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 34992 SlC3H54 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 54 Solyc09g074640|C3H54 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 35536 SlC3H55 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 55 Solyc09g092250|C3H55 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 36047 SlC3H56 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 56 C3H56|Solyc10g008880 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 36469 SlC3H57 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 57 C3H57|Solyc10g038000 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 36674 SlC3H58 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 58 Solyc10g047040|C3H58 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37538 SlC3H59 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 59 Solyc10g078750|C3H59 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37575 SlC3H60 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 60 Solyc10g079120|C3H60 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37582 SlC3H61 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 61 Solyc10g079190|C3H61 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37685 SlC3H62 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 62 C3H62|Solyc10g080260 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37707 SlC3H63 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 63 C3H63|Solyc10g080480 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0075177) -- SGN 37771 SlCaM2 GO:0075177 PMID:23621884 IDA P Calmodulin 2 CAM2|Solyc10g081170 gene taxon:4081 20130610 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 37912 SlC3H64 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 64 C3H64|Solyc10g083640 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 38594 SlC3H65 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 65 Solyc11g008900|C3H65 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 39912 SlC3H66 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 66 Solyc11g062240|C3H66 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40020 SlC3H67 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 67 C3H67|Solyc11g065320 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40165 SlC3H68 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 68 Solyc11g066830|C3H68 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40312 SlC3H69 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 69 Solyc11g069340|C3H69 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40380 SlC3H70 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 70 Solyc11g070070|C3H70 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40670 SlC3H71 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 71 Solyc12g005770|C3H71 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40750 SlC3H72 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 72 C3H72|Solyc12g006620 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40851 SlC3H73 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 73 Solyc12g008660|C3H73 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40871 SlC3H74 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 74 C3H74|Solyc12g008870 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 40919 SlC3H75 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 75 Solyc12g009390|C3H75 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 41304 SlC3H76 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 76 Solyc12g017410|C3H76 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 41592 SlC3H77 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 77 Solyc12g035250|C3H77 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 41892 SlC3H78 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 78 C3H78|Solyc12g040230 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 41899 SlC3H79 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 79 Solyc12g040300|C3H79 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0071537) -- SGN 42691 SlC3H80 GO:0071537 PMID:24870401 ISS P Zinc finger transcription factor 80 C3H80|Solyc12g089260 gene taxon:4081 20150304 SGN
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042965) -- SGN 43099 SlGRX1 GO:0042965 PMID:20862491 IDA P glutaredoxin gene gene taxon:4081 20101210 SGN

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

• total: 0

gorule-0000029

All IEAs over a year old are removed

• total: 0

gorule-0000030

Deprecated GO_REFs are not allowed

• total: 0

gorule-0000033

Public Reference IDs (PMID, PMC, doi, or GO_REF) should be preferred over group specific Reference IDs

• total: 26

Messages

• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 1068 not GO:0031976 SGN_ref:861 ISS C notabilis SlNCED1|LeNCED1|Solyc07g056570 gene taxon:4081 20071116 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 8373 ORR GO:0009507 SGN_ref:861 IDA C Orange Ripening Solyc04g057980 gene taxon:4081 20101105 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 963 SlMAPKK1 GO:0004708 SGN_ref:861 IDA F MAP kinase kinase 1 mkk1|mitogen activated protein kinase kinase 1|LeMKK1|mek1|Solyc12g009020 gene taxon:4081 20070109 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 1305 Mi1-2 GO:0030275 SGN_ref:861 ISS F Mi-1.2 Solyc06g008450|Mi-1.2 gene taxon:4081 20080130 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 1305 Mi1-2 GO:0043522 SGN_ref:861 ISS F Mi-1.2 Solyc06g008450|Mi-1.2 gene taxon:4081 20080130 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 5513 TOMARGDECA GO:0008792 SGN_ref:861 IDA F arginine decarboxylase ARGDC|ADC|Solyc01g110440 gene taxon:4081 20080507 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 11165 SODCC1 GO:0004784 SGN_ref:861 IDA F Superoxide dismutase [Cu-Zn] 1 Solyc01g067740 gene taxon:4081 20120914 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 11165 SODCC1 GO:0016209 SGN_ref:861 IDA F Superoxide dismutase [Cu-Zn] 1 Solyc01g067740 gene taxon:4081 20120914 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 15753 SLGLR3_5 GO:0008066 SGN_ref:861 IDA F glutamate receptor-like 3.5 Solyc02g082480|SLGLR3.5 gene taxon:4081 20111214 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 22937 SLGLR3_3 GO:0008066 SGN_ref:861 IDA F glutamate receptor like 3.3 SLGLR 3.3|Solyc04g082610 gene taxon:4081 20111215 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 24621 SLGLR3_4 GO:0008066 SGN_ref:861 IDA F glutamate receptor-like3.4 SLGLR3.4|Solyc05g045650 gene taxon:4081 20111214 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 37485 SlDRM1L1 GO:0003886 SGN_ref:861 IDA F cytosine-5 DNA methyltransferaseL1 SlDRM1L1|DRM1L1|Solyc10g078190 gene taxon:4081 20141210 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 277 cf9 GO:0050832 SGN_ref:861 TAS P Cladosporium fulvum resistance-9 Cf-9 gene taxon:4081 20071109 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 489 ob489-AY275554 GO:0009845 SGN_ref:861 IEP P ob489-ethylene response factor 2 AY275554 Sl-ERF2|Solyc07g049350 gene taxon:4081 20071010 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 717 i2 GO:0050832 SGN_ref:861 IEP P Immunity to Fusarium wilt race 2 I-2|Solyc11g071430 gene taxon:4081 20100425 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 1068 not GO:0043289 SGN_ref:861 IDA P notabilis LeNCED1|Solyc07g056570|SlNCED1 gene taxon:4081 20071116 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 4227 Sl-ERF_E_1 GO:0009845 SGN_ref:861 IEP P ethylene response factor E.1 leerf2|erf2b|Sl-ERF2|Solyc09g075420|Sl-ERF.E.1|ERF.E.1|SlERF.E.1 gene taxon:4081 20111017 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 5583 tg1 GO:0006811 SGN_ref:861 IDA P test gene tg2|tg gene taxon:4081 20120214 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 8373 ORR GO:0009835 SGN_ref:861 IMP P Orange Ripening Solyc04g057980 gene taxon:4081 20101105 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 8373 ORR GO:0045454 SGN_ref:861 IMP P Orange Ripening Solyc04g057980 gene taxon:4081 20101105 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 8373 ORR GO:0016117 SGN_ref:861 IMP P Orange Ripening Solyc04g057980 gene taxon:4081 20101105 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 8373 ORR GO:0010258 SGN_ref:861 ISS P Orange Ripening Solyc04g057980 gene taxon:4081 20101105 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 13469 SAUR11 GO:0009409 SGN_ref:861 IDA P Small auxin up-regulated RNA11 Solyc01g110770 gene taxon:4081 20120919 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 27717 SlSAUR62 GO:0009651 SGN_ref:861 IDA P Small auxin up-regulated RNA62 Solyc06g074950 gene taxon:4081 20121015 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 29365 SlDEAH22 GO:0016070 SGN_ref:861 IDA P RNA helicase DEAH-box22 RNA helicase|Solyc07g042010 gene taxon:4081 20130313 SGN
• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (SGN_ref:861) -- SGN 37024 SlSAUR76 GO:0009734 SGN_ref:861 IDA P Small auxin up-regulated RNA76 Solyc10g052580|SAUR76 gene taxon:4081 20121017 SGN

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

• total: 0

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

• total: 0

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

• total: 0

gorule-0000043

Check for valid combination of evidence code and GO_REF

• total: 0

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

• total: 0

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

• total: 0

other

• total: 0

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #1362 annotations in 1370 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000007 IPI should not be used with catalytic activity molecular function terms Warning count: 1
74 GO_AR:0000007 Warning IPI should not be used with catalytic activity molecular function terms SGN 5257 pmt GO:0030750 PMID:17221359 IPI NCBI_gi:86438859 F putrescine N-methyltransferase Solyc06g053510 gene taxon:4081 20090625 SGN
#------------
# GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 15
290 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 68 SlIAA3 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA3 LeIAA3|IAA3|Solyc09g065850 gene taxon:4081 20141120 SGN
322 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 463 e GO:0006950 PMID:22314799 IEP P entire b|SlIAA9|iaa9|LeIAA4|IAA4|ctd1|Solyc04g076850|SlIAA4 gene taxon:4081 20141120 SGN
426 GO_AR:0000008 Warning Do not annotate to: GO:0009628 'response to abiotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 4506 Asr2 GO:0009628 PMID:17602312 IEP P Abscicic acid stress ripening 2 Solyc04g071580 gene taxon:4081 20080215 SGN
528 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 9403 SlMAPKKK1 GO:0006950 PMID:25036993 IDA P MAP kinase kinase kinase 1 Solyc01g005030|MAPKKK1 gene taxon:4081 20141103 SGN
820 GO_AR:0000008 Warning Do not annotate to: GO:0009628 'response to abiotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 20062 iaa14 GO:0009628 PMID:22314799 IDA P auxin-regulated IAA14 Solyc03g121060|SlIAA14 gene taxon:4081 20141121 SGN
854 GO_AR:0000008 Warning Do not annotate to: GO:0009628 'response to abiotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 22083 Asr_2 GO:0009628 PMID:17602312 IEP P Abscicic acid stress ripening 2 Solyc04g071580|Asr2 gene taxon:4081 20120509 SGN
950 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 26635 SlC3H43 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 43 Solyc06g054620|C3H43 gene taxon:4081 20150304 SGN
988 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 27917 SlC3H48 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 48 24870401|C3H48|Solyc06g082010 gene taxon:4081 20150304 SGN
1009 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 28803 SlIAA20 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA20 SlIAA20|iaa20|Solyc07g019450 gene taxon:4081 20141121 SGN
1052 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 29921 SlC3H50 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 50 Solyc07g053750|C3H50 gene taxon:4081 20150304 SGN
1161 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 35249 SlIAA1 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA1 IAA1|Solyc09g083280 gene taxon:4081 20141124 SGN
1296 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 40630 SlMAPKKK83 GO:0006950 PMID:25036993 IEP P MAP kinase kinase kinase 83 MAPKKK83|Solyc12g005360 gene taxon:4081 20141111 SGN
1307 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 40851 SlC3H73 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 73 Solyc12g008660|C3H73 gene taxon:4081 20150304 SGN
1315 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 40914 SlMAPKKK84 GO:0006950 PMID:25036993 IEP P MAP kinase kinase kinase 84 MAPKKK84|Solyc12g009340 gene taxon:4081 20141111 SGN
1348 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 42691 SlC3H80 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 80 C3H80|Solyc12g089260 gene taxon:4081 20150304 SGN
#------------

GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045552 dihydrokaempferol 4-reductase activity ISS
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0033744 L-methionine:thioredoxin-disulfide S-oxidoreductase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0004672 protein kinase activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004784 superoxide dismutase activity IDA
GO:0019430 removal of superoxide radicals AnnotationPropagation P GO:0004784 superoxide dismutase activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IDA
GO:0010466 negative regulation of peptidase activity AnnotationPropagation P GO:0030414 peptidase inhibitor activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045544 gibberellin 20-oxidase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0016209 antioxidant activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045544 gibberellin 20-oxidase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045544 gibberellin 20-oxidase activity IDA
GO:0010951 negative regulation of endopeptidase activity AnnotationPropagation P GO:0004869 cysteine-type endopeptidase inhibitor activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008234 cysteine-type peptidase activity IDA