GAF summary
Found 273 annotations in 281 lines.
GAF Validation Summary Errors are reported first.
For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 2 violations with type Warning.
GAF Prediction Summary
Found 12 predictions, see prediction file for details.
Used Ontology Summary
go/extensions/go-gaf go/releases/2019-10-31/extensions/go-gaf.owl
This report generated on 2019-11-02
No 'NOT' annotations to 'protein binding ; GO:0005515'
IEP and HEP usage is restricted to terms from the Biological Process ontology
IPI should not be used with catalytic activity molecular function terms
No annotations should be made to uninformative high level terms
ASAP ABF-0020512 gacA GO:0042710 PMID:18052890 IMP P "Response regulator of the two-component transcriptional regulatory system UvrY-BarA (ExpA-ExpS, GacA-GacS)" gene taxon:198628 20080222 ASAP
ND annotations to root nodes only; and only root nodes can have the evidence code ND.
Taxon-appropriate annotation check
Dual species taxon check
With/From: IC annotations require a With/From GO ID
ASAP ABF-0016563 iaaH GO:0009405 PMID:17189441 IC P Indoleacetamide hydrolase gene taxon:198628 20080125 ASAP
ASAP ABF-0047129 togB GO:0009405 PMID:11555291 IC ASAP:ABF-0019625 P "Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component" gene taxon:198628 20080307 ASAP
ASAP ABF-0174089 togN GO:0009405 PMID:11555291 IC ASAP:ABF-0019625 P "oligogalacturonide ABC transporter, permease component" gene taxon:198628 20080307 ASAP
ASAP ABF-0174090 togA GO:0009405 PMID:11555291 IC ASAP:ABF-0019625 P "oligogalacturonide ABC transporter, ATPase component" gene taxon:198628 20080307 ASAP
IDA annotations must not have a With/From entry
IPI annotations require a With/From entry
Automatic repair of annotations to merged or obsoleted terms
ASAP ABF-0015085 ompR GO:0045941 PMID:17573480 IMP P DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015085 ompR GO:0016481 PMID:17573480 IMP P DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015085 ompR GO:0016563 PMID:17573480 IMP F DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015085 ompR GO:0016564 PMID:17573480 IMP F DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015577 hrpL GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080221 ASAP
ASAP ABF-0015577 hrpL GO:0032022 PMID:15629935 IMP P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080131 ASAP
ASAP ABF-0015577 hrpL GO:0045941 PMID:7592386 ISA ASAP:ACW-0293760 P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080225 ASAP
ASAP ABF-0015577 hrpL GO:0016563 PMID:7592386 ISA ASAP:ACW-0293760 F RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080225 ASAP
ASAP ABF-0015577 hrpL GO:0052049 PMID:7592386 ISA ASAP:ACW-0293760 P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080225 ASAP
ASAP ABF-0015579 hrpJ GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P type III secretion protein gene taxon:198628 20080221 ASAP
ASAP ABF-0015580 hrcV GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)" gene taxon:198628 20080221 ASAP
ASAP ABF-0015581 hrpQ GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpQ gene taxon:198628 20080221 ASAP
ASAP ABF-0015582 hrcN GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)" gene taxon:198628 20080221 ASAP
ASAP ABF-0015583 hrpO GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpO gene taxon:198628 20080221 ASAP
ASAP ABF-0015584 hrpP GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpP gene taxon:198628 20080221 ASAP
ASAP ABF-0015585 hrcQ GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrcQ gene taxon:198628 20080221 ASAP
ASAP ABF-0015586 hrcR GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)" gene taxon:198628 20080221 ASAP
ASAP ABF-0015587 hrcS GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion inner membrane protein (YscS,homologous to flagellar export components)" gene taxon:198628 20080221 ASAP
ASAP ABF-0015588 hrcT GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015589 P "Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components)" gene taxon:198628 20080221 ASAP
ASAP ABF-0015589 hrcU GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588 P "Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components)" gene taxon:198628 20080221 ASAP
ASAP ABF-0016089 pecS GO:0030528 PMID:18790868 IMP F DNA-binding transcriptional regulatory protein PecS gene taxon:198628 20080130 ASAP
ASAP ABF-0016089 pecS GO:0045449 PMID:18790868 IMP P DNA-binding transcriptional regulatory protein PecS gene taxon:198628 20080130 ASAP
ASAP ABF-0016544 scrR GO:0016481 PMID:10986236 ISA ASAP:ACW-0289472 P "Fructose repressor FruR, LacI family" gene taxon:198628 20080117 ASAP
ASAP ABF-0016544 scrR GO:0016564 PMID:10986236 ISA ASAP:ACW-0289472 F "Fructose repressor FruR, LacI family" gene taxon:198628 20080117 ASAP
ASAP ABF-0018901 rhaS GO:0045941 PMID:14982630 IMP P "DNA-binding transcriptional activator, L-rhamnose-binding" JW3876|rhaC|ECK3898 gene taxon:198628 20080123 ASAP
ASAP ABF-0018901 rhaS GO:0016563 PMID:14982630 IMP F "DNA-binding transcriptional activator, L-rhamnose-binding" JW3876|rhaC|ECK3898 gene taxon:198628 20080123 ASAP
ASAP ABF-0019414 expR GO:0016564 PMID:16831870 IDA F DNA-binding transcriptional regulatory protein ExpR gene taxon:198628 20080208 ASAP
ASAP ABF-0019585 ORF3 GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P hypothetical protein gene taxon:198628 20080221 ASAP
ASAP ABF-0019586 ORF4 GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P Membrane-bound lytic murein transglycosylase B gene taxon:198628 20080221 ASAP
ASAP ABF-0019587 hrpE GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpE gene taxon:198628 20080221 ASAP
ASAP ABF-0019588 hrpD GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpD gene taxon:198628 20080221 ASAP
ASAP ABF-0019590 hrcJ GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)" gene taxon:198628 20080221 ASAP
ASAP ABF-0019590 hrcJ GO:0032022 PMID:15629935 IMP P "Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)" gene taxon:198628 20080131 ASAP
ASAP ABF-0019592 hrpB GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpB gene taxon:198628 20080221 ASAP
ASAP ABF-0019593 hrpA GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P Hrp pili protein hrpA gene taxon:198628 20080221 ASAP
ASAP ABF-0019593 hrpA GO:0032022 PMID:15629935 IMP P Hrp pili protein hrpA gene taxon:198628 20080131 ASAP
ASAP ABF-0019594 hrpS GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpS type III protein secretion system regulatory protein gene taxon:198628 20080221 ASAP
ASAP ABF-0019594 hrpS GO:0032022 PMID:15629935 IMP P HrpS type III protein secretion system regulatory protein gene taxon:198628 20080131 ASAP
ASAP ABF-0019594 hrpS GO:0045941 PMID:7592386 ISA ASAP:ACW-0293740 P HrpS type III protein secretion system regulatory protein gene taxon:198628 20080225 ASAP
ASAP ABF-0019594 hrpS GO:0016563 PMID:7592386 ISA ASAP:ACW-0293740 F HrpS type III protein secretion system regulatory protein gene taxon:198628 20080225 ASAP
ASAP ABF-0019598 hrpY GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "DNA-binding response regulator, LuxR family, near polyamine transporter" gene taxon:198628 20080221 ASAP
ASAP ABF-0019598 hrpY GO:0032022 PMID:15629935 IMP P "DNA-binding response regulator, LuxR family, near polyamine transporter" gene taxon:198628 20080131 ASAP
ASAP ABF-0019600 hrpX GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P type III protein secretion system sensor kinase gene taxon:198628 20080221 ASAP
ASAP ABF-0019600 hrpX GO:0032022 PMID:15629935 IMP P type III protein secretion system sensor kinase gene taxon:198628 20080131 ASAP
ASAP ABF-0020117 kdgR GO:0016481 PMID:1840643 IDA P DNA-binding transcriptional regulatory protein KdgR gene taxon:198628 20080115 ASAP
ASAP ABF-0020117 kdgR GO:0016564 PMID:1840643 IDA F DNA-binding transcriptional regulatory protein KdgR gene taxon:198628 20080115 ASAP
ASAP ABF-0020783 hrpV GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpV gene taxon:198628 20080221 ASAP
ASAP ABF-0020784 hrpN GO:0052049 PMID:9707625 IGI ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P Harpin hrpN gene taxon:198628 20080221 ASAP
ASAP ABF-0020863 hrpT GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpT precursor gene taxon:198628 20080221 ASAP
ASAP ABF-0020864 hrcC GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)" gene taxon:198628 20080221 ASAP
ASAP ABF-0020864 hrcC GO:0052049 PMID:9612954 IMP P "Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)" gene taxon:198628 20080213 ASAP
ASAP ABF-0020865 hrpG GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpG precursor gene taxon:198628 20080221 ASAP
ASAP ABF-0020866 hrpF GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpF gene taxon:198628 20080221 ASAP
ASAP ABF-0020867 plcA GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P Extracellular phospholipase C gene taxon:198628 20080221 ASAP
ASAP ABF-0047134 ORF2 GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P hypothetical protein gene taxon:198628 20080221 ASAP
Aspect can only be one of C, P, F and should be repaired using the GO term
All IEAs over a year old are removed
Deprecated GO_REFs are not allowed
IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference
Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants
Qualifier: IKR evidence code requires a NOT qualifier
Check for valid combination of evidence code and GO_REF
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.
Annotations to ISS, ISA and ISO should not be self-referential