GAF summary
Found 247 annotations in 255 lines.
GAF Validation Summary Errors are reported first.
For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003) Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there are 2 violations with type Warning.
For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 67 violations with type Warning.
GAF Prediction Summary
Found 8 predictions, see prediction file for details.
Used Ontology Summary
go/extensions/go-gaf go/releases/2019-10-31/extensions/go-gaf.owl
This report generated on 2019-11-02
No 'NOT' annotations to 'protein binding ; GO:0005515'
IEP and HEP usage is restricted to terms from the Biological Process ontology
IPI should not be used with catalytic activity molecular function terms
No annotations should be made to uninformative high level terms
NCBI_NP NP_354692.1 tatC GO:0005215 GO_REF:0000027 ISS Swiss-Prot:P69423 F SEC-independent protein translocase protein Atu1704 gene taxon:176299 20070306 PAMGO_GAT
NCBI_NP NP_354693.2 tatB GO:0005215 GO_REF:0000027 ISS Swiss-Prot:P69425 F sec-independent translocase Atu1705 gene taxon:176299 20070306 PAMGO_GAT
NCBI_NP NP_354694.1 tatA GO:0005215 GO_REF:0000027 ISS Swiss-Prot:P72267 F twin argininte translocase protein A Atu1706 gene taxon:176299 20070306 PAMGO_GAT
NCBI_NP NP_354563.1 yajC GO:0044425 GO_REF:0000027 ISS Swiss-Prot:Q2YNM1 C preprotein tranlocase protein Atu1563 gene taxon:176299 20070312 PAMGO_GAT
NCBI_NP NP_353570.1 fla GO:0006928 PMID:10411267 IMP P flagellin Atu0542 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353571.2 flaB GO:0006928 PMID:10411267 IMP P flaB Atu0543 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353572.1 flaA GO:0006928 PMID:10411267 IMP P flagellaassociatedprotein Atu0545 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353573.1 fliP GO:0006928 PMID:10411267 IMP P flagellarbiosynthesisproteinFliP Atu0546 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353574.1 fliL GO:0006928 PMID:9161424 IMP P flagellarprotein Atu0547 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353575.1 flgH GO:0006928 PMID:9161424 NAS P flagellarbasalbodyL-ringprotein Atu0548 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353577.1 flgI GO:0006928 PMID:9161424 NAS P flagellarbasalbodyP-ringprotein Atu0550 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353578.2 flgA GO:0006928 PMID:9161424 NAS P flagellarbasalbodyP-ringbiosynthesisproteinFlgA Atu0551 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353579.1 flgG GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgG Atu0552 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353580.1 fliE GO:0006928 PMID:9161424 NAS P flagellarhook-basalbodyproteinFliE Atu0553 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353581.1 flgC GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgC Atu0554 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353582.2 flgB GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgB Atu0555 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353584.1 fliI GO:0006928 PMID:10411267 IMP P flagellum-specificATPsynthase Atu0557 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353585.1 flgF GO:0006928 PMID:10411267 NAS P flagellarbasalbodyrodproteinFlgF Atu0558 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353543.2 Atu0514 GO:0006928 PMID:9767126 IGC P methyl-acceptingchemotaxisprotein Atu0514 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353545.1 cheY GO:0006928 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0516 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353546.2 cheA GO:0006928 PMID:9767126 IGC P Chemotaxisproteinhistidinekinase Atu0517 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353547.1 cheR GO:0006928 PMID:9767126 IGC P chemotaxismethyltransferase Atu0518 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353548.1 cheB GO:0006928 PMID:9767126 IGC P chemotaxis-specificmethylesterase Atu0519 gene taxon:176299 20070418 PAMGO_GAT
NCBI_NP NP_353549.1 cheY GO:0006928 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0520 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353550.1 cheD GO:0006928 PMID:9767126|PMID:10970853 IGC P methyl-acceptingchemotaxisprotein Atu0521 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353552.1 fliF GO:0006928 PMID:9858749 ISS NCBI_GI:17380368 P flagellarMS-ringprotein Atu0523 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353556.2 mclA GO:0006928 PMID:10869063 TAS P methyl-acceptingchemotaxisprotein Atu0526 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353587.1 motA GO:0006928 PMID:9161425 IMP P flagellarmotorproteinMotA Atu0560 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353588.2 fliM GO:0006928 PMID:9161425 IMP P flagellarmotorswitchprotein Atu0561 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353589.2 fliN GO:0006928 PMID:9161425 IMP P flagellarmotorswitchproteinFliN Atu0562 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353590.1 fliG GO:0006928 PMID:9161425 IMP P flagellarmotorswitchproteinG Atu0563 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353591.1 flhB GO:0006928 PMID:10411267 IMP P flagellarbiosynthesisproteinFlhB Atu0564 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353593.2 flaD GO:0006928 PMID:10411267 IMP P flagellinproteinFlaD Atu0567 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353588.2 fliM GO:0001539 PMID:9161425 IMP P flagellarmotorswitchprotein Atu0561 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353589.2 fliN GO:0001539 PMID:9161425 IMP P flagellarmotorswitchproteinFliN Atu0562 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353590.1 fliG GO:0001539 PMID:9161425 IMP P flagellarmotorswitchproteinG Atu0563 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353570.1 fla GO:0006928 PMID:10411267 IMP P flagellin Atu0542 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353571.2 flaB GO:0006928 PMID:10411267 IMP P flaB Atu0543 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353572.1 flaA GO:0006928 PMID:10411267 IMP P flagellaassociatedprotein Atu0545 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353573.1 fliP GO:0006928 PMID:10411267 IMP P flagellarbiosynthesisproteinFliP Atu0546 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353574.1 fliL GO:0006928 PMID:9161424 IMP P flagellarprotein Atu0547 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353575.1 flgH GO:0006928 PMID:9161424 NAS P flagellarbasalbodyL-ringprotein Atu0548 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353577.1 flgI GO:0006928 PMID:9161424 NAS P flagellarbasalbodyP-ringprotein Atu0550 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353578.2 flgA GO:0006928 PMID:9161424 NAS P flagellarbasalbodyP-ringbiosynthesisproteinFlgA Atu0551 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353579.1 flgG GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgG Atu0552 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353580.1 fliE GO:0006928 PMID:9161424 NAS P flagellarhook-basalbodyproteinFliE Atu0553 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353581.1 flgC GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgC Atu0554 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353582.2 flgB GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgB Atu0555 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353584.1 fliI GO:0006928 PMID:10411267 IMP P flagellum-specificATPsynthase Atu0557 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353585.1 flgF GO:0006928 PMID:10411267 NAS P flagellarbasalbodyrodproteinFlgF Atu0558 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353543.2 Atu0514 GO:0006928 PMID:9767126 IGC P methyl-acceptingchemotaxisprotein Atu0514 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353545.1 cheY GO:0006928 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0516 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353546.2 cheA GO:0006928 PMID:9767126 IGC P Chemotaxisproteinhistidinekinase Atu0517 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353547.1 cheR GO:0006928 PMID:9767126 IGC P chemotaxismethyltransferase Atu0518 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353548.1 cheB GO:0006928 PMID:9767126 IGC P chemotaxis-specificmethylesterase Atu0519 gene taxon:176299 20070418 PAMGO_GAT
NCBI_NP NP_353549.1 cheY GO:0006928 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0520 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353550.1 cheD GO:0006928 PMID:9767126|PMID:10970853 IGC P methyl-acceptingchemotaxisprotein Atu0521 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353552.1 fliF GO:0006928 PMID:9858749 ISS NCBI_GI:17380368 P flagellarMS-ringprotein Atu0523 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353556.2 mclA GO:0006928 PMID:10869063 TAS P methyl-acceptingchemotaxisprotein Atu0526 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353587.1 motA GO:0006928 PMID:9161425 IMP P flagellarmotorproteinMotA Atu0560 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353588.2 fliM GO:0006928 PMID:9161425 IMP P flagellarmotorswitchprotein Atu0561 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353589.2 fliN GO:0006928 PMID:9161425 IMP P flagellarmotorswitchproteinFliN Atu0562 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353590.1 fliG GO:0006928 PMID:9161425 IMP P flagellarmotorswitchproteinG Atu0563 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353591.1 flhB GO:0006928 PMID:10411267 IMP P flagellarbiosynthesisproteinFlhB Atu0564 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353593.2 flaD GO:0006928 PMID:10411267 IMP P flagellinproteinFlaD Atu0567 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353588.2 fliM GO:0001539 PMID:9161425 IMP P flagellarmotorswitchprotein Atu0561 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353589.2 fliN GO:0001539 PMID:9161425 IMP P flagellarmotorswitchproteinFliN Atu0562 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353590.1 fliG GO:0001539 PMID:9161425 IMP P flagellarmotorswitchproteinG Atu0563 gene taxon:176299 20070427 PAMGO_GAT
ND annotations to root nodes only; and only root nodes can have the evidence code ND.
Taxon-appropriate annotation check
Dual species taxon check
With/From: IC annotations require a With/From GO ID
NCBI_NP NP_396504.2 virD3 NOT GO:0009405 PMID:8231811 IC P virA/Gregulatedprotein Atu6183 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396504.2 virD3 NOT GO:0009405 PMID:8231811 IC P virA/Gregulatedprotein Atu6183 gene taxon:176299 20070329 PAMGO_GAT
IDA annotations must not have a With/From entry
IPI annotations require a With/From entry
Automatic repair of annotations to merged or obsoleted terms
NCBI_NP NP_396521.1 rolB GO:0044006 GO_REF:0000027 ISS NCBI_gi:133269 P C' protein Atu6003 gene taxon:176299 20070621 PAMGO_GAT
NCBI_NP NP_396522.1 Atu6004 GO:0044006 GO_REF:0000027 ISS NCBI_gi:133269 P D protein Atu6004 gene taxon:176299 20070622 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0044006 PMID:1915286 TAS P E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0044006 PMID:8596628 TAS P E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0044006 PMID:10737141 TAS P E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_354563.1 yajC GO:0044425 GO_REF:0000027 ISS Swiss-Prot:Q2YNM1 C preprotein tranlocase protein Atu1563 gene taxon:176299 20070312 PAMGO_GAT
Each identifier in GAF is valid
NCBI_NP NP_354299.2 lolD GO:0043190 GO_REF:0000027 ISS Swiss-Prot:P75957 C "ABC transporter, nucleotide binding/ATPase protein (lipoprotein)" Atu1290 gene taxon:176299 20070612 PAMGO_GAT
NCBI_NP NP_354299.2 lolD GO:0042626 GO_REF:0000027 ISS Swiss-Prot:P75957 F "ABC transporter, nucleotide binding/ATPase protein (lipoprotein)" Atu1290 gene taxon:176299 20070612 PAMGO_GAT
NCBI_NP NP_396519.1 Atu6001 GO:0006520 GO_REF:0000027 ISS NCBI_gi:1353125 P 5 protein Atu6001 gene taxon:176299 20070619 PAMGO_GAT
NCBI_NP NP_396521.1 rolB GO:0004725 GO_REF:0000027 ISS NCBI_gi:133269 F C' protein Atu6003 gene taxon:176299 20070621 PAMGO_GAT
NCBI_NP NP_396521.1 rolB GO:0044006 GO_REF:0000027 ISS NCBI_gi:133269 P C' protein Atu6003 gene taxon:176299 20070621 PAMGO_GAT
NCBI_NP NP_396521.1 rolB GO:0009405 GO_REF:0000027 ISS NCBI_gi:133269 P C' protein Atu6003 gene taxon:176299 20070621 PAMGO_GAT
NCBI_NP NP_396522.1 Atu6004 GO:0004725 GO_REF:0000027 ISS NCBI_gi:133269 F D protein Atu6004 gene taxon:176299 20070622 PAMGO_GAT
NCBI_NP NP_396522.1 Atu6004 GO:0044006 GO_REF:0000027 ISS NCBI_gi:133269 P D protein Atu6004 gene taxon:176299 20070622 PAMGO_GAT
NCBI_NP NP_396522.1 Atu6004 GO:0009405 GO_REF:0000027 ISS NCBI_gi:133269 P D protein Atu6004 gene taxon:176299 20070622 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0004725 PMID:1915286 TAS F E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0044006 PMID:1915286 TAS P E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0009405 PMID:1915286 TAS P E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0004725 PMID:8596628 TAS F E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0044006 PMID:8596628 TAS P E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0009405 PMID:8596628 TAS P E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0004725 PMID:10737141 TAS F E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0044006 PMID:10737141 TAS P E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_396523.1 Atu6005 GO:0009405 PMID:10737141 TAS P E protein Atu6005 gene taxon:176299 20070627 PAMGO_GAT
NCBI_NP NP_396287.1 Atu5354 GO:0015474 GO_REF:0000027 ISS Swiss-Prot:Q03155 F autotransporting virulence factor family member Atu5354 gene taxon:176299 20070306 PAMGO_GAT
NCBI_NP NP_396287.1 Atu5354 GO:0015475 GO_REF:0000027 ISS Swiss-Prot:Q03155 F autotransporting virulence factor family member Atu5354 gene taxon:176299 20070306 PAMGO_GAT
NCBI_NP NP_354692.1 tatC GO:0005215 GO_REF:0000027 ISS Swiss-Prot:P69423 F SEC-independent protein translocase protein Atu1704 gene taxon:176299 20070306 PAMGO_GAT
NCBI_NP NP_354693.2 tatB GO:0005215 GO_REF:0000027 ISS Swiss-Prot:P69425 F sec-independent translocase Atu1705 gene taxon:176299 20070306 PAMGO_GAT
NCBI_NP NP_354694.1 tatA GO:0005215 GO_REF:0000027 ISS Swiss-Prot:P72267 F twin argininte translocase protein A Atu1706 gene taxon:176299 20070306 PAMGO_GAT
NCBI_NP NP_353258.2 Atu0226 GO:0009289 PMID:11743193 NAS C PilQ Atu0226 gene taxon:176299 20070307 PAMGO_GAT
NCBI_NP NP_354563.1 yajC GO:0044425 GO_REF:0000027 ISS Swiss-Prot:Q2YNM1 C preprotein tranlocase protein Atu1563 gene taxon:176299 20070312 PAMGO_GAT
NCBI_NP NP_353249.1 ctpI GO:0009289 GO_REF:0000027 ISS NCBI_gi:32452628 C components of type IV pilus Atu0216 gene taxon:176299 20070305 PAMGO_GAT
NCBI_NP NP_353250.1 ctpH GO:0009289 GO_REF:0000027 ISS NCBI_gi:7208429 C components of type IV pilus Atu0217 gene taxon:176299 20070305 PAMGO_GAT
NCBI_NP NP_353251.2 ctpG GO:0009289 GO_REF:0000027 ISS NCBI_gi:7208428 C component of type IV pilus Atu0218 gene taxon:176299 20070305 PAMGO_GAT
NCBI_NP NP_353252.2 ctpF GO:0009289 GO_REF:0000027 ISS NCBI_gi:7208427 C components of type IV pilus Atu0219 gene taxon:176299 20070305 PAMGO_GAT
NCBI_NP NP_353253.2 ctpE GO:0009289 GO_REF:0000027 ISS NCBI_gi:7208426 C components of type IV pilus Atu0220 gene taxon:176299 20070305 PAMGO_GAT
NCBI_NP NP_353254.1 ctpD GO:0009289 GO_REF:0000027 ISS NCBI_gi:7208425 C component of type IV pilus Atu0221 gene taxon:176299 20070305 PAMGO_GAT
NCBI_NP NP_353255.1 ctpC GO:0009289 GO_REF:0000027 ISS NCBI_gi:7208424 C components of type IV pilus Atu0222 gene taxon:176299 20070305 PAMGO_GAT
NCBI_NP NP_353256.1 ctpB GO:0009289 GO_REF:0000027 ISS NCBI_gi:7208423 C "components of type IV pilus, prepilin peptidase" Atu0223 gene taxon:176299 20070305 PAMGO_GAT
NCBI_NP NP_353257.2 ctpA GO:0009289 GO_REF:0000027 ISS NCBI_gi:7208422 C "components of type IV pilus, pilin subunit" Atu0224 gene taxon:176299 20070305 PAMGO_GAT
NCBI_NP NP_357091.2 secA GO:0015627 GO_REF:0000027 ISS Swiss-Prot:P10408 C preprotein translocase subunit SecA Atu3520 gene taxon:176299 20070312 PAMGO_GAT
NCBI_NP NP_354903.2 prlA GO:0015627 GO_REF:0000027 ISS Swiss-Prot:P03844 C preprotein translocase subunit SecY Atu1927 gene taxon:176299 20070312 PAMGO_GAT
NCBI_NP NP_354562.2 secD GO:0015627 GO_REF:0000027 ISS Swiss-Prot:Q2YNM0 C bifunctional preprotein translocase subunit SecD/SecF Atu1562 gene taxon:176299 20070312 PAMGO_GAT
NCBI_NP NP_354613.2 secG GO:0015628 GO_REF:0000027 ISS Swiss-Prot:P33582 P preprotein translocase subunit SecG Atu1619 gene taxon:176299 20070314 PAMGO_GAT
NCBI_NP NP_353046.1 secB GO:0009306 GO_REF:0000027 ISS Swiss-Prot:Q8KRM2 P preprotein translocase subunit SecB Atu0006 gene taxon:176299 20070318 PAMGO_GAT
NCBI_NP NP_354937.2 secE GO:0009306 GO_REF:0000027 ISS NCBI_gi:16131811 P preprotein translocase subunit SecE Atu1962 gene taxon:176299 20070318 PAMGO_GAT
NCBI_NP NP_355632.2 ffh GO:0009306 GO_REF:0000027 ISS Swiss-Prot:P37105 P signal recognition particle protein Atu2697 gene taxon:176299 20070318 PAMGO_GAT
NCBI_NP NP_357091.2 secA GO:0015628 GO_REF:0000027 ISS Swiss-Prot:P10408 P preprotein translocase subunit SecA Atu3520 gene taxon:176299 20070312 PAMGO_GAT
NCBI_NP NP_354903.2 prlA GO:0015628 GO_REF:0000027 ISS Swiss-Prot:P03844 P preprotein translocase subunit SecY Atu1927 gene taxon:176299 20070312 PAMGO_GAT
NCBI_NP NP_354562.2 secD GO:0015628 GO_REF:0000027 ISS Swiss-Prot:Q2YNM0 P bifunctional preprotein translocase subunit SecD/SecF Atu1562 gene taxon:176299 20070312 PAMGO_GAT
NCBI_NP NP_354613.2 secG GO:0015628 GO_REF:0000027 ISS Swiss-Prot:P33582 P preprotein translocase subunit SecG Atu1619 gene taxon:176299 20070314 PAMGO_GAT
NCBI_NP NP_353046.1 secB GO:0006457 GO_REF:0000027 ISS Swiss-Prot:Q8KRM2 P preprotein translocase subunit SecB Atu0006 gene taxon:176299 20070318 PAMGO_GAT
NCBI_NP NP_396509.1 virE1 GO:0006457 PMID:15012192 TAS P protein secretion chaperone Atu6189 gene taxon:176299 20070322 PAMGO_GAT
NCBI_NP NP_396510.1 virE2 GO:0003677 PMID:15012192 TAS F exported virulence protein Atu6190 gene taxon:176299 20070322 PAMGO_GAT
NCBI_NP NP_396511.1 virE3 GO:0051170 GO_REF:0000027 ISS NCBI_gi:10955164 P virA/G regulated protein Atu6191 gene taxon:176299 20070324 PAMGO_GAT
NCBI_NP NP_536106.1 virE3 GO:0051170 GO_REF:0000027 ISS NCBI_gi:10955164 P virA/G regulated protein Atu6186 gene taxon:176299 20070326 PAMGO_GAT
NCBI_NP NP_396487.2 virB1 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6167 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396488.1 virB2 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C "componentoftypeIVsecretionsystem,pilinsubunit" Atu6168 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396489.1 virB3 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6169 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396491.1 virB4 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6170 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396492.1 virB5 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6171 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396493.2 virB6 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6172 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_536093.1 virB7 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6173 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396495.2 virB8 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6174 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396496.1 virB9 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6175 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396497.1 virB10 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6176 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396498.2 virB11 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252|PMID:3448462 IGC C componentoftypeIVsecretionsystem Atu6177 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396487.2 virB1 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6167 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396488.1 virB2 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P "componentoftypeIVsecretionsystem,pilinsubunit" Atu6168 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396489.1 virB3 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6169 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396491.1 virB4 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6170 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396492.1 virB5 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6171 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396493.2 virB6 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6172 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_536093.1 virB7 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6173 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396495.2 virB8 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6174 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396496.1 virB9 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6175 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396497.1 virB10 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6176 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396498.2 virB11 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252|PMID:3448462 IGC P componentoftypeIVsecretionsystem Atu6177 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_353570.1 fla GO:0006928 PMID:10411267 IMP P flagellin Atu0542 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353571.2 flaB GO:0006928 PMID:10411267 IMP P flaB Atu0543 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353572.1 flaA GO:0006928 PMID:10411267 IMP P flagellaassociatedprotein Atu0545 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353573.1 fliP GO:0006928 PMID:10411267 IMP P flagellarbiosynthesisproteinFliP Atu0546 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353574.1 fliL GO:0006928 PMID:9161424 IMP P flagellarprotein Atu0547 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353575.1 flgH GO:0006928 PMID:9161424 NAS P flagellarbasalbodyL-ringprotein Atu0548 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353577.1 flgI GO:0006928 PMID:9161424 NAS P flagellarbasalbodyP-ringprotein Atu0550 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353578.2 flgA GO:0006928 PMID:9161424 NAS P flagellarbasalbodyP-ringbiosynthesisproteinFlgA Atu0551 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353579.1 flgG GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgG Atu0552 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353580.1 fliE GO:0006928 PMID:9161424 NAS P flagellarhook-basalbodyproteinFliE Atu0553 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353581.1 flgC GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgC Atu0554 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353582.2 flgB GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgB Atu0555 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353584.1 fliI GO:0006928 PMID:10411267 IMP P flagellum-specificATPsynthase Atu0557 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353585.1 flgF GO:0006928 PMID:10411267 NAS P flagellarbasalbodyrodproteinFlgF Atu0558 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353570.1 fla GO:0052143 PMID:10411267 IMP P flagellin Atu0542 gene taxon:176299 20070402 PAMGO_GAT
NCBI_NP NP_353571.2 flaB GO:0052143 PMID:10411267 IMP P flaB Atu0543 gene taxon:176299 20070402 PAMGO_GAT
NCBI_NP NP_353572.1 flaA GO:0052143 PMID:10411267 IMP P flagellaassociatedprotein Atu0545 gene taxon:176299 20070402 PAMGO_GAT
NCBI_NP NP_353573.1 fliP GO:0052143 PMID:7828930 ISS Swiss-Prot:P37827 P flagellarbiosynthesisproteinFliP Atu0546 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353575.1 flgH GO:0009425 PMID:9161424 NAS C flagellarbasalbodyL-ringprotein Atu0548 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353577.1 flgI GO:0009425 PMID:9161424 NAS C flagellarbasalbodyP-ringprotein Atu0550 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353579.1 flgG GO:0009425 PMID:9161424 NAS C flagellarbasalbodyrodproteinFlgG Atu0552 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353580.1 fliE GO:0009425 PMID:9161424 NAS C flagellarhook-basalbodyproteinFliE Atu0553 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353581.1 flgC GO:0009425 PMID:9161424 NAS C flagellarbasalbodyrodproteinFlgC Atu0554 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353582.2 flgB GO:0009425 PMID:9161424 NAS C flagellarbasalbodyrodproteinFlgB Atu0555 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353584.1 fliI GO:0009288 PMID:10411267 IMP C flagellum-specificATPsynthase Atu0557 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353585.1 flgF GO:0030694 PMID:10411267 NAS C flagellarbasalbodyrodproteinFlgF Atu0558 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353584.1 fliI GO:0016887 GO_REF:0000027 ISS Swiss-Prot:O07025 F flagellum-specificATPsynthase Atu0557 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_396486.1 virA GO:0000155 GO_REF:0000027 ISS Swiss-Prot:P07168 F twocomponentsensorkinase Atu6166 gene taxon:176299 20070320 PAMGO_GAT
NCBI_NP NP_396501.1 virC1 GO:0003677 PMID:3584058|PMID:2592351 IGC F virA/Gregulatedprotein Atu6180 gene taxon:176299 20070321 PAMGO_GAT
NCBI_NP NP_396501.1 virC1 GO:0003677 GO_REF:0000027 ISS Swiss-Prot:P07165 F virA/Gregulatedprotein Atu6180 gene taxon:176299 20070321 PAMGO_GAT
NCBI_NP NP_396500.2 virC2 GO:0003677 PMID:3584058|PMID:2194232|PMID:15028687 IGC F virA/Gregulatedprotein Atu6179 gene taxon:176299 20070321 PAMGO_GAT
NCBI_NP NP_396502.2 virD1 GO:0003677 PMID:9689041 IDA F virA/Gregulatedtopoisomerase Atu6181 gene taxon:176299 20070322 PAMGO_GAT
NCBI_NP NP_396502.2 virD1 GO:0051170 PMID:9689041 IDA P virA/Gregulatedtopoisomerase Atu6181 gene taxon:176299 20070322 PAMGO_GAT
NCBI_NP NP_396503.1 virD2 GO:0051170 PMID:9689041 IDA P endonuclease Atu6182 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396503.1 virD2 GO:0003677 PMID:9689041 IDA F endonuclease Atu6182 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396505.2 virD4 GO:0043684 PMID:16709150 TAS C virA/Gregulatedprotein Atu6184 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396505.2 virD4 GO:0030255 PMID:16709150 TAS P virA/Gregulatedprotein Atu6184 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396506.1 virD5 GO:0030255 PMID:16709150 TAS P virA/Gregulatedprotein Atu6185 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396676.1 virF GO:0005515 PMID:15343337|PMID:12795696 IDA F exportedvirulenceprotein Atu6154 gene taxon:176299 20070324 PAMGO_GAT
NCBI_NP NP_396499.1 virG GO:0000156 PMID:15012192 TAS F twocomponentresponseregulator Atu6178 gene taxon:176299 20070322 PAMGO_GAT
NCBI_NP NP_396672.1 virH1 GO:0004497 PMID:9791116 IDA F P-450monooxygenase Atu6150 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396673.1 virH2 GO:0004497 PMID:9791116 IDA F P-450monoxygenase Atu6151 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_353543.2 Atu0514 GO:0052143 PMID:9767126 IGC P methyl-acceptingchemotaxisprotein Atu0514 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353545.1 cheY GO:0052143 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0516 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353546.2 cheA GO:0052143 PMID:9767126 IGC P Chemotaxisproteinhistidinekinase Atu0517 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353547.1 cheR GO:0052143 PMID:9767126 IGC P chemotaxismethyltransferase Atu0518 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353548.1 cheB GO:0052143 PMID:9767126 IGC P chemotaxis-specificmethylesterase Atu0519 gene taxon:176299 20070418 PAMGO_GAT
NCBI_NP NP_353549.1 cheY GO:0052143 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0520 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353550.1 cheD GO:0052143 PMID:9767126|PMID:10970853 IGC P methyl-acceptingchemotaxisprotein Atu0521 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353552.1 fliF GO:0052143 PMID:9858749 ISS NCBI_GI:17380368 P flagellarMS-ringprotein Atu0523 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353556.2 mclA GO:0052143 PMID:10869063 TAS P methyl-acceptingchemotaxisprotein Atu0526 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353543.2 Atu0514 GO:0006928 PMID:9767126 IGC P methyl-acceptingchemotaxisprotein Atu0514 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353545.1 cheY GO:0006928 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0516 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353546.2 cheA GO:0006928 PMID:9767126 IGC P Chemotaxisproteinhistidinekinase Atu0517 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353547.1 cheR GO:0006928 PMID:9767126 IGC P chemotaxismethyltransferase Atu0518 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353548.1 cheB GO:0006928 PMID:9767126 IGC P chemotaxis-specificmethylesterase Atu0519 gene taxon:176299 20070418 PAMGO_GAT
NCBI_NP NP_353549.1 cheY GO:0006928 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0520 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353550.1 cheD GO:0006928 PMID:9767126|PMID:10970853 IGC P methyl-acceptingchemotaxisprotein Atu0521 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353552.1 fliF GO:0006928 PMID:9858749 ISS NCBI_GI:17380368 P flagellarMS-ringprotein Atu0523 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353556.2 mclA GO:0006928 PMID:10869063 TAS P methyl-acceptingchemotaxisprotein Atu0526 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353552.1 fliF GO:0009431 PMID:9858749 ISS NCBI_GI:17380368 C flagellarMS-ringprotein Atu0523 gene taxon:176299 20070423 PAMGO_GAT
NCBI_NP NP_353549.1 cheY GO:0000160 GO_REF:0000027 ISS PDB:1P6U_A P chemotaxisreceiverprotein Atu0520 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353587.1 motA GO:0052143 PMID:9161425 IMP P flagellarmotorproteinMotA Atu0560 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353588.2 fliM GO:0052143 PMID:9161425 IMP P flagellarmotorswitchprotein Atu0561 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353589.2 fliN GO:0052143 PMID:9161425 IMP P flagellarmotorswitchproteinFliN Atu0562 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353590.1 fliG GO:0052143 PMID:9161425 IMP P flagellarmotorswitchproteinG Atu0563 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353591.1 flhB GO:0052143 PMID:10411267 IMP P flagellarbiosynthesisproteinFlhB Atu0564 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353593.2 flaD GO:0052143 PMID:10411267 IMP P flagellinproteinFlaD Atu0567 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353587.1 motA GO:0006928 PMID:9161425 IMP P flagellarmotorproteinMotA Atu0560 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353588.2 fliM GO:0006928 PMID:9161425 IMP P flagellarmotorswitchprotein Atu0561 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353589.2 fliN GO:0006928 PMID:9161425 IMP P flagellarmotorswitchproteinFliN Atu0562 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353590.1 fliG GO:0006928 PMID:9161425 IMP P flagellarmotorswitchproteinG Atu0563 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353591.1 flhB GO:0006928 PMID:10411267 IMP P flagellarbiosynthesisproteinFlhB Atu0564 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353593.2 flaD GO:0006928 PMID:10411267 IMP P flagellinproteinFlaD Atu0567 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353588.2 fliM GO:0001539 PMID:9161425 IMP P flagellarmotorswitchprotein Atu0561 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353589.2 fliN GO:0001539 PMID:9161425 IMP P flagellarmotorswitchproteinFliN Atu0562 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353590.1 fliG GO:0001539 PMID:9161425 IMP P flagellarmotorswitchproteinG Atu0563 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_396487.2 virB1 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6167 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396488.1 virB2 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C "componentoftypeIVsecretionsystem,pilinsubunit" Atu6168 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396489.1 virB3 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6169 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396491.1 virB4 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6170 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396492.1 virB5 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6171 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396493.2 virB6 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6172 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_536093.1 virB7 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6173 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396495.2 virB8 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6174 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396496.1 virB9 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6175 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396497.1 virB10 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252 IGC C componentoftypeIVsecretionsystem Atu6176 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396498.2 virB11 GO:0043684 PMID:2370849|PMID:2194232|PMID:2233252|PMID:3448462 IGC C componentoftypeIVsecretionsystem Atu6177 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396487.2 virB1 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6167 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396488.1 virB2 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P "componentoftypeIVsecretionsystem,pilinsubunit" Atu6168 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396489.1 virB3 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6169 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396491.1 virB4 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6170 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396492.1 virB5 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6171 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396493.2 virB6 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6172 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_536093.1 virB7 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6173 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396495.2 virB8 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6174 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396496.1 virB9 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6175 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396497.1 virB10 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252 IGC P componentoftypeIVsecretionsystem Atu6176 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_396498.2 virB11 GO:0030255 PMID:2370849|PMID:2194232|PMID:2233252|PMID:3448462 IGC P componentoftypeIVsecretionsystem Atu6177 gene taxon:176299 20070206 PAMGO_GAT
NCBI_NP NP_353570.1 fla GO:0006928 PMID:10411267 IMP P flagellin Atu0542 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353571.2 flaB GO:0006928 PMID:10411267 IMP P flaB Atu0543 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353572.1 flaA GO:0006928 PMID:10411267 IMP P flagellaassociatedprotein Atu0545 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353573.1 fliP GO:0006928 PMID:10411267 IMP P flagellarbiosynthesisproteinFliP Atu0546 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353574.1 fliL GO:0006928 PMID:9161424 IMP P flagellarprotein Atu0547 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353575.1 flgH GO:0006928 PMID:9161424 NAS P flagellarbasalbodyL-ringprotein Atu0548 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353577.1 flgI GO:0006928 PMID:9161424 NAS P flagellarbasalbodyP-ringprotein Atu0550 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353578.2 flgA GO:0006928 PMID:9161424 NAS P flagellarbasalbodyP-ringbiosynthesisproteinFlgA Atu0551 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353579.1 flgG GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgG Atu0552 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353580.1 fliE GO:0006928 PMID:9161424 NAS P flagellarhook-basalbodyproteinFliE Atu0553 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353581.1 flgC GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgC Atu0554 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353582.2 flgB GO:0006928 PMID:9161424 NAS P flagellarbasalbodyrodproteinFlgB Atu0555 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353584.1 fliI GO:0006928 PMID:10411267 IMP P flagellum-specificATPsynthase Atu0557 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353585.1 flgF GO:0006928 PMID:10411267 NAS P flagellarbasalbodyrodproteinFlgF Atu0558 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353570.1 fla GO:0052143 PMID:10411267 IMP P flagellin Atu0542 gene taxon:176299 20070402 PAMGO_GAT
NCBI_NP NP_353571.2 flaB GO:0052143 PMID:10411267 IMP P flaB Atu0543 gene taxon:176299 20070402 PAMGO_GAT
NCBI_NP NP_353572.1 flaA GO:0052143 PMID:10411267 IMP P flagellaassociatedprotein Atu0545 gene taxon:176299 20070402 PAMGO_GAT
NCBI_NP NP_353573.1 fliP GO:0052143 PMID:7828930 ISS Swiss-Prot:P37827 P flagellarbiosynthesisproteinFliP Atu0546 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353575.1 flgH GO:0009425 PMID:9161424 NAS C flagellarbasalbodyL-ringprotein Atu0548 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353577.1 flgI GO:0009425 PMID:9161424 NAS C flagellarbasalbodyP-ringprotein Atu0550 gene taxon:176299 20070411 PAMGO_GAT
NCBI_NP NP_353579.1 flgG GO:0009425 PMID:9161424 NAS C flagellarbasalbodyrodproteinFlgG Atu0552 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353580.1 fliE GO:0009425 PMID:9161424 NAS C flagellarhook-basalbodyproteinFliE Atu0553 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353581.1 flgC GO:0009425 PMID:9161424 NAS C flagellarbasalbodyrodproteinFlgC Atu0554 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353582.2 flgB GO:0009425 PMID:9161424 NAS C flagellarbasalbodyrodproteinFlgB Atu0555 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353584.1 fliI GO:0009288 PMID:10411267 IMP C flagellum-specificATPsynthase Atu0557 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353585.1 flgF GO:0030694 PMID:10411267 NAS C flagellarbasalbodyrodproteinFlgF Atu0558 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_353584.1 fliI GO:0016887 GO_REF:0000027 ISS Swiss-Prot:O07025 F flagellum-specificATPsynthase Atu0557 gene taxon:176299 20070407 PAMGO_GAT
NCBI_NP NP_396486.1 virA GO:0000155 GO_REF:0000027 ISS Swiss-Prot:P07168 F twocomponentsensorkinase Atu6166 gene taxon:176299 20070320 PAMGO_GAT
NCBI_NP NP_396501.1 virC1 GO:0003677 PMID:3584058|PMID:2592351 IGC F virA/Gregulatedprotein Atu6180 gene taxon:176299 20070321 PAMGO_GAT
NCBI_NP NP_396501.1 virC1 GO:0003677 GO_REF:0000027 ISS Swiss-Prot:P07165 F virA/Gregulatedprotein Atu6180 gene taxon:176299 20070321 PAMGO_GAT
NCBI_NP NP_396500.2 virC2 GO:0003677 PMID:3584058|PMID:2194232|PMID:15028687 IGC F virA/Gregulatedprotein Atu6179 gene taxon:176299 20070321 PAMGO_GAT
NCBI_NP NP_396502.2 virD1 GO:0003677 PMID:9689041 IDA F virA/Gregulatedtopoisomerase Atu6181 gene taxon:176299 20070322 PAMGO_GAT
NCBI_NP NP_396502.2 virD1 GO:0051170 PMID:9689041 IDA P virA/Gregulatedtopoisomerase Atu6181 gene taxon:176299 20070322 PAMGO_GAT
NCBI_NP NP_396503.1 virD2 GO:0051170 PMID:9689041 IDA P endonuclease Atu6182 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396503.1 virD2 GO:0003677 PMID:9689041 IDA F endonuclease Atu6182 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396505.2 virD4 GO:0043684 PMID:16709150 TAS C virA/Gregulatedprotein Atu6184 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396505.2 virD4 GO:0030255 PMID:16709150 TAS P virA/Gregulatedprotein Atu6184 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396506.1 virD5 GO:0030255 PMID:16709150 TAS P virA/Gregulatedprotein Atu6185 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396676.1 virF GO:0005515 PMID:15343337|PMID:12795696 IDA F exportedvirulenceprotein Atu6154 gene taxon:176299 20070324 PAMGO_GAT
NCBI_NP NP_396499.1 virG GO:0000156 PMID:15012192 TAS F twocomponentresponseregulator Atu6178 gene taxon:176299 20070322 PAMGO_GAT
NCBI_NP NP_396672.1 virH1 GO:0004497 PMID:9791116 IDA F P-450monooxygenase Atu6150 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_396673.1 virH2 GO:0004497 PMID:9791116 IDA F P-450monoxygenase Atu6151 gene taxon:176299 20070329 PAMGO_GAT
NCBI_NP NP_353543.2 Atu0514 GO:0052143 PMID:9767126 IGC P methyl-acceptingchemotaxisprotein Atu0514 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353545.1 cheY GO:0052143 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0516 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353546.2 cheA GO:0052143 PMID:9767126 IGC P Chemotaxisproteinhistidinekinase Atu0517 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353547.1 cheR GO:0052143 PMID:9767126 IGC P chemotaxismethyltransferase Atu0518 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353548.1 cheB GO:0052143 PMID:9767126 IGC P chemotaxis-specificmethylesterase Atu0519 gene taxon:176299 20070418 PAMGO_GAT
NCBI_NP NP_353549.1 cheY GO:0052143 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0520 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353550.1 cheD GO:0052143 PMID:9767126|PMID:10970853 IGC P methyl-acceptingchemotaxisprotein Atu0521 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353552.1 fliF GO:0052143 PMID:9858749 ISS NCBI_GI:17380368 P flagellarMS-ringprotein Atu0523 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353556.2 mclA GO:0052143 PMID:10869063 TAS P methyl-acceptingchemotaxisprotein Atu0526 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353543.2 Atu0514 GO:0006928 PMID:9767126 IGC P methyl-acceptingchemotaxisprotein Atu0514 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353545.1 cheY GO:0006928 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0516 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353546.2 cheA GO:0006928 PMID:9767126 IGC P Chemotaxisproteinhistidinekinase Atu0517 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353547.1 cheR GO:0006928 PMID:9767126 IGC P chemotaxismethyltransferase Atu0518 gene taxon:176299 20070413 PAMGO_GAT
NCBI_NP NP_353548.1 cheB GO:0006928 PMID:9767126 IGC P chemotaxis-specificmethylesterase Atu0519 gene taxon:176299 20070418 PAMGO_GAT
NCBI_NP NP_353549.1 cheY GO:0006928 PMID:9767126 IGC P chemotaxisreceiverprotein Atu0520 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353550.1 cheD GO:0006928 PMID:9767126|PMID:10970853 IGC P methyl-acceptingchemotaxisprotein Atu0521 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353552.1 fliF GO:0006928 PMID:9858749 ISS NCBI_GI:17380368 P flagellarMS-ringprotein Atu0523 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353556.2 mclA GO:0006928 PMID:10869063 TAS P methyl-acceptingchemotaxisprotein Atu0526 gene taxon:176299 20070421 PAMGO_GAT
NCBI_NP NP_353552.1 fliF GO:0009431 PMID:9858749 ISS NCBI_GI:17380368 C flagellarMS-ringprotein Atu0523 gene taxon:176299 20070423 PAMGO_GAT
NCBI_NP NP_353549.1 cheY GO:0000160 GO_REF:0000027 ISS PDB:1P6U_A P chemotaxisreceiverprotein Atu0520 gene taxon:176299 20070419 PAMGO_GAT
NCBI_NP NP_353587.1 motA GO:0052143 PMID:9161425 IMP P flagellarmotorproteinMotA Atu0560 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353588.2 fliM GO:0052143 PMID:9161425 IMP P flagellarmotorswitchprotein Atu0561 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353589.2 fliN GO:0052143 PMID:9161425 IMP P flagellarmotorswitchproteinFliN Atu0562 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353590.1 fliG GO:0052143 PMID:9161425 IMP P flagellarmotorswitchproteinG Atu0563 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353591.1 flhB GO:0052143 PMID:10411267 IMP P flagellarbiosynthesisproteinFlhB Atu0564 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353593.2 flaD GO:0052143 PMID:10411267 IMP P flagellinproteinFlaD Atu0567 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353587.1 motA GO:0006928 PMID:9161425 IMP P flagellarmotorproteinMotA Atu0560 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353588.2 fliM GO:0006928 PMID:9161425 IMP P flagellarmotorswitchprotein Atu0561 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353589.2 fliN GO:0006928 PMID:9161425 IMP P flagellarmotorswitchproteinFliN Atu0562 gene taxon:176299 20070426 PAMGO_GAT
NCBI_NP NP_353590.1 fliG GO:0006928 PMID:9161425 IMP P flagellarmotorswitchproteinG Atu0563 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353591.1 flhB GO:0006928 PMID:10411267 IMP P flagellarbiosynthesisproteinFlhB Atu0564 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353593.2 flaD GO:0006928 PMID:10411267 IMP P flagellinproteinFlaD Atu0567 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353588.2 fliM GO:0001539 PMID:9161425 IMP P flagellarmotorswitchprotein Atu0561 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353589.2 fliN GO:0001539 PMID:9161425 IMP P flagellarmotorswitchproteinFliN Atu0562 gene taxon:176299 20070427 PAMGO_GAT
NCBI_NP NP_353590.1 fliG GO:0001539 PMID:9161425 IMP P flagellarmotorswitchproteinG Atu0563 gene taxon:176299 20070427 PAMGO_GAT
Aspect can only be one of C, P, F and should be repaired using the GO term
All IEAs over a year old are removed
Deprecated GO_REFs are not allowed
IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference
Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants
Qualifier: IKR evidence code requires a NOT qualifier
Check for valid combination of evidence code and GO_REF
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.
Annotations to ISS, ISA and ISO should not be self-referential