• Summary (original)
• Report (original)
• OWLTools check (original)
• Predictions (original)
• Predictions (experimental) (original)

GAF summary

Found 42079 annotations in 42098 lines.

GAF Validation Summary

No errors, warnings, or recommendations to report.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-06-28/extensions/go-gaf.owl

GAF Prediction Summary

Found 3 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-06-28/extensions/go-gaf.owl

Group: goa - Dataset: goa_pig_isoform

SUMMARY

This report generated on 2019-07-01

• Associations: 42079
• Lines in file (incl headers): 55236
• Lines skipped: 13145

Header From Original Association File

!gaf-version: 2.1
!
!The set of protein accessions included in this file is based on UniProt complete proteomes, which may provide more than one protein per gene.
!They include all Swiss-Prot entries for the species plus any TrEMBL entries that have an Ensembl DR line. The TrEMBL entries are likely to overlap with the Swiss-Prot entries or their isoforms.
!If a particular protein accession is not annotated with GO, then it will not appear in this file.
!
!Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in
!ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz
!
!Generated: 2019-06-03 16:56
!GO-version: http://purl.obolibrary.org/obo/go/releases/2019-06-02/extensions/go-plus.owl
!

Contents

gorule-0000020

gorule-0000033

other

MESSAGES

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 8

Messages

• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:1904265) -- UniProtKB A0A287AKB2 YOD1 GO:1904265 GO_REF:0000002 IEA InterPro:IPR039138 F Ubiquitin thioesterase OTU1 isoform 2 YOD1 protein taxon:9823 20190601 InterPro UniProtKB:F1RTR7
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035068) -- UniProtKB A0A287B5S7 AGO2 GO:0035068 GO_REF:0000104 IEA UniRule:UR000107560 C Protein argonaute-2 AGO2|EIF2C2 protein taxon:9823 20190601 UniProt UniProtKB:A0A286ZQ43
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035068) -- UniProtKB A0A287B5S7 AGO2 GO:0035068 GO_REF:0000104 IEA UniRule:UR000107560 C Protein argonaute-2 AGO2|EIF2C2 protein taxon:9823 20190601 UniProt UniProtKB:A0A287AY99
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035068) -- UniProtKB A0A287B5S7 AGO2 GO:0035068 GO_REF:0000104 IEA UniRule:UR000107560 C Protein argonaute-2 AGO2|EIF2C2 protein taxon:9823 20190601 UniProt UniProtKB:F1RSJ1
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035068) -- UniProtKB I3L5V9 AGO3 GO:0035068 GO_REF:0000104 IEA UniRule:UR000106187 C Protein argonaute-4 AGO3|AGO4|EIF2C4 protein taxon:9823 20190601 UniProt UniProtKB:A0A286ZL92
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035068) -- UniProtKB I3L5V9 AGO3 GO:0035068 GO_REF:0000104 IEA UniRule:UR000106187 C Protein argonaute-4 AGO3|AGO4|EIF2C4 protein taxon:9823 20190601 UniProt UniProtKB:A0A287BFJ8
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035068) -- UniProtKB I3L5V9 AGO3 GO:0035068 GO_REF:0000104 IEA UniRule:UR000107558 C Protein argonaute-3 AGO3|EIF2C3 protein taxon:9823 20190601 UniProt UniProtKB:F1SV62
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035068) -- UniProtKB I3L5V9 EIF2C4 GO:0035068 GO_REF:0000104 IEA UniRule:UR000106187 C Protein argonaute-4 EIF2C4|AGO3|AGO4 protein taxon:9823 20190601 UniProt UniProtKB:F1SV64

gorule-0000033

Public Reference IDs (PMID, PMC, doi, or GO_REF) should be preferred over group specific Reference IDs

• total: 1

Messages

• WARNING - Invalid identifier prefix: References should only be from ID prefixes PMID, PMD, doi, or GO_REF (DOI:10.1016/j.procbio.2011.10.027) -- UniProtKB A0A287BJX6 ACVR2B GO:1901389 DOI:10.1016/j.procbio.2011.10.027 IMP P Serine/threonine-protein kinase receptor ACVR2B protein taxon:9823 20160111 AgBase UniProtKB:K7GLP5

other

• total: 0

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #42079 annotations in 42098 lines
#------------
# No errors, warnings, or recommendations to report.

GO:0043657 host cell AnnotationPropagation C GO:0075733 intracellular transport of virus IMP
GO:0010466 negative regulation of peptidase activity AnnotationPropagation P GO:0030414 peptidase inhibitor activity IDA
GO:2000116 regulation of cysteine-type endopeptidase activity FoldBasedPredictor GO:0010447 response to acidic pH regulates GO:0004197 cysteine-type endopeptidase activity IDA