Table of contents
Summary
GAF summary
Found 24685 annotations in 24704 lines.
GAF Validation Summary
Errors are reported first.
For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014)
Valid GO term ID, there are 5 violations with type Error.
GAF Prediction Summary
Found 5 predictions, see prediction file for details.
Used Ontology Summary
go/extensions/go-gaf go/releases/2019-06-08/extensions/go-gaf.owl
Report
SUMMARY
This report generated on 2019-06-09
- Associations: 24685
- Lines in file (incl headers): 30898
- Lines skipped: 6201
!gaf-version: 2.1
!
!The set of protein accessions included in this file is based on UniProt complete proteomes, which may provide more than one protein per gene.
!They include all Swiss-Prot entries for the species plus any TrEMBL entries that have an Ensembl DR line. The TrEMBL entries are likely to overlap with the Swiss-Prot entries or their isoforms.
!If a particular protein accession is not annotated with GO, then it will not appear in this file.
!
!Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in
!ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz
!
!Generated: 2019-06-03 16:54
!GO-version: http://purl.obolibrary.org/obo/go/releases/2019-06-02/extensions/go-plus.owl
!
Contents
gorule-0000008
gorule-0000020
other
MESSAGES
gorule-0000008
No annotations should be made to uninformative high level terms
Messages
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) --
UniProtKB A0A1L1RL66 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:A0A1D5PFN2
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) --
UniProtKB Q9YGL6 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-2
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) --
UniProtKB Q9YGL6 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-3
gorule-0000020
Automatic repair of annotations to merged or obsoleted terms
Messages
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035068) --
UniProtKB A0A3Q2U647 TNRC6C GO:0035068 PMID:21873635 IBA PANTHER:PTN000989337|UniProtKB:Q8NDV7 C Uncharacterized protein TNRC6C protein taxon:9031 20180720 GO_Central UniProtKB:F1NI60
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035068) --
UniProtKB F1P3Z0 AGO3 GO:0035068 GO_REF:0000104 IEA UniRule:UR000107558 C Protein argonaute-3 AGO3|EIF2C3 protein taxon:9031 20190601 UniProt UniProtKB:A0A1D5PIT3
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0035068) --
UniProtKB Q5ZMW0 AGO4 GO:0035068 GO_REF:0000104 IEA UniRule:UR000106187 C Protein argonaute-4 AGO4|EIF2C4 protein taxon:9031 20190601 UniProt UniProtKB:A0A1D5PZS8
other
OWLTools check
#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #24685 annotations in 24704 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000014 Valid GO term ID Error count: 5
2016 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A1D5P7I0 CLASP1 GO:0010717 PMID:23940118 IMP P Uncharacterized protein CLASP1 protein taxon:9031 20150521 UniProt happens_during(GO:0007369),has_agent(GO:0043256),occurs_in(CL:0000352) UniProtKB:E1BVC3
2028 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A1D5P7I0 CLASP1 GO:1904261 PMID:23940118 IMP P Uncharacterized protein CLASP1 protein taxon:9031 20150521 UniProt happens_during(GO:0001837),happens_during(GO:0007369),has_agent(GO:0043256),occurs_in(CL:0000352) UniProtKB:E1BVC3
9698 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q2U2T5 CLASP2 GO:0010717 PMID:23940118 IMP P Uncharacterized protein CLASP2 protein taxon:9031 20170214 UniProt happens_during(GO:0007369),has_agent(GO:0043256),occurs_in(CL:0000352) UniProtKB:A0A1D5P1B0
9700 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q2U2T5 CLASP2 GO:1904261 PMID:23940118 IMP P Uncharacterized protein CLASP2 protein taxon:9031 20170214 UniProt happens_during(GO:0001837),happens_during(GO:0007369),has_agent(GO:0043256),occurs_in(CL:0000352) UniProtKB:A0A1D5P1B0
10544 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q2U6L4 PHLDB2 GO:0010717 GO_REF:0000024 ISS UniProtKB:Q86SQ0 P Uncharacterized protein PHLDB2 protein taxon:9031 20150521 UniProt happens_during(GO:0007369),has_agent(GO:0043256),occurs_in(CL:0000352) UniProtKB:E1C7W8
#------------
Predictions
GO:0005623 cell AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi ISS
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi ISS
GO:0032259 methylation AnnotationPropagation P GO:0046539 histamine N-methyltransferase activity IDA
GO:0044295 axonal growth cone FoldBasedPredictor GO:2000009 negative regulation of protein localization to cell surface occurs_in GO:0044295 axonal growth cone transports_or_maintains_localization_of UniProtKB:P79795 IMP
GO:0097458 neuron part FoldBasedPredictor GO:0045177 apical part of cell adjacent_to GO:0032421 stereocilium bundle part_of CL:0000202 auditory hair cell part_of UBERON:0001844 cochlea IDA
Predictions (experimental)