#Line number RuleID ViolationType Message Line #------------ #------------ # Validation for #47173 annotations in 47185 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000001 Basic GAF checks Error count: 1 22250 GO_AR:0000001 Error Column 10: DB Object Name cardinality is found greater than 1 in the row: GR_PROTEIN Q69QR7 P0463D04.19 GO:0009536 GR_REF:7047 RCA C Putative phosphatidylinositol transfer-like protein II| LOC_Os09g30330|Putative phosphatidylinositol transfer-like protein II|Os09g0481100 protein taxon:39947 20080620 GR #------------ # GO_AR:0000011 ND annotations to root nodes only Error count: 22 2552 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN P12212 cemA GO:0003674 GR_REF:8030 RCA InterPro:IPR004282 F Chloroplast envelope membrane protein YCF10 protein taxon:39947 20060831 GR 2553 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN P35682 Os12g0149800, LOC_Os12g05410 GO:0003674 GR_REF:8030 RCA InterPro:IPR001748 F Protein BUD31 homolog 3 protein taxon:4530 20060831 GR 2554 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q9AV02 OSJNBa0026O12.9 GO:0003674 GR_REF:8030 RCA InterPro:IPR004159 F Hypothetical protein OSJNBa0026O12.9 LOC_Os10g33720|Os10g0477100 protein taxon:39947 20060831 GR 2555 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q9SPP2 Q9SPP2 GO:0003674 GR_REF:8030 RCA InterPro:IPR004159 F Hypothetical 13.8 kDa protein protein taxon:4530 20060831 GR 2556 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q9SPN9 Q9SPN9 GO:0003674 GR_REF:8030 RCA InterPro:IPR004159 F Hypothetical 5.9 kDa protein Os06g0103900|LOC_Os06g01450 protein taxon:4530 20060831 GR 2557 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q9FP37 P0035H10.3 GO:0003674 GR_REF:8030 RCA InterPro:IPR004158 F P0035H10.3 protein LOC_Os01g19610|Os01g0301900 protein taxon:39947 20060831 GR 2558 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q94LM8 OSJNBb0024A20.2 GO:0003674 GR_REF:8030 RCA InterPro:IPR004146 F Hypothetical protein OSJNBb0024A20.2 LOC_Os07g41980|Os07g0610700 protein taxon:39947 20060831 GR 2559 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q94LM6 OSJNBb0024A20.4 GO:0003674 GR_REF:8030 RCA InterPro:IPR004146 F Hypothetical protein OSJNBb0024A20.4 Os07g0610100|LOC_Os07g41920 protein taxon:39947 20060831 GR 2560 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q94LM0 OSJNBb0024A20.10 GO:0003674 GR_REF:8030 RCA InterPro:IPR004146 F Hypothetical protein OSJNBb0024A20.10 Os07g0609600|LOC_Os07g41860 protein taxon:39947 20060831 GR 2561 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q94GX1 OSJNBa0005K07.2 GO:0003674 GR_REF:8030 RCA InterPro:IPR004159 F Hypothetical protein OSJNBa0005K07.2 Os10g0510400|LOC_Os10g36690 protein taxon:39947 20060831 GR 2562 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q94DE2 Os01g0857700, LOC_Os01g63890 GO:0003674 GR_REF:8030 RCA InterPro:IPR001748 F Protein BUD31 homolog 1 protein taxon:39947 20060831 GR 2563 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q94D66 B1153F04.26 GO:0003674 GR_REF:8030 RCA InterPro:IPR004158 F Hypothetical protein B1153F04.26 Os01g0319400|LOC_Os01g21670 protein taxon:39947 20060831 GR 2564 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q941U5 P0005H10.3 GO:0003674 GR_REF:8030 RCA InterPro:IPR004159 F Ankyrin-like protein Os01g0846600|LOC_Os01g62800 protein taxon:39947 20060831 GR 2565 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q8W396 OSJNBa0013O08.23 GO:0003674 GR_REF:8030 RCA InterPro:IPR004159 F Hypothetical protein OSJNBa0013O08.23 LOC_Os03g26200|Os03g0379100 protein taxon:39947 20060831 GR 2566 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0003674 with evidence code: RCA GR_PROTEIN Q8S7P9 OSJNBa0095C07.16 GO:0003674 GR_REF:8030 RCA InterPro:IPR004159 F Hypothetical protein OSJNBa0095C07.16 Os10g0569300|LOC_Os10g41970 protein taxon:39947 20060831 GR 10800 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0005575 with evidence code: TAS GR_PROTEIN P17654 AMY1.1 GO:0005575 GR_REF:3222|PMID:2370848 TAS C Alpha-amylase precursor Isozyme 1B|1,4-alpha-D-glucan glucanohydrolase|AMY1A protein taxon:39947 20080408 GR 10807 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0005575 with evidence code: TAS GR_PROTEIN P27934 AMY1.4 GO:0005575 GR_REF:1522|PMID:2263460 TAS C Alpha-amylase isozyme 3E precursor 1,4-alpha-D-glucan glucanohydrolase|AMY3E protein taxon:39947 20080408 GR 10837 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0005575 with evidence code: TAS GR_PROTEIN P27939 AMY1.7 GO:0005575 GR_REF:4298|PMID:1714318 TAS C Alpha-amylase isozyme 3C precursor 1,4-alpha-D-glucan glucanohydrolase|AMY3B protein taxon:39947 20080408 GR 10861 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0005575 with evidence code: TAS GR_PROTEIN P27933 AMY1.3 GO:0005575 GR_REF:1522|PMID:2263460 TAS C Alpha-amylase isozyme 3D precursor AMY3D|1,4-alpha-D-glucan glucanohydrolase protein taxon:39947 20080408 GR 10862 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0005575 with evidence code: TAS GR_PROTEIN P27933 AMY1.3 GO:0005575 GR_REF:3222|PMID:2370848 TAS C Alpha-amylase isozyme 3D precursor AMY3D|1,4-alpha-D-glucan glucanohydrolase protein taxon:39947 20080408 GR 10866 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0005575 with evidence code: TAS GR_PROTEIN P27932 AMY1.2 GO:0005575 GR_REF:4298|PMID:1714318 TAS C Alpha-amylase isozyme 3A precursor 1,4-alpha-D- glucan glucanohydrolase|AMY3A protein taxon:39947 20080408 GR 10879 GO_AR:0000011 Error ND annotations to root nodes only, but was root node: GO:0005575 with evidence code: TAS GR_PROTEIN P27937 Amy3B GO:0005575 GR_REF:4298|PMID:1714318 TAS C Alpha-amylase isozyme 3B precursor 1,4-alpha-D-glucan glucanohydrolase|Alpha-amylase isozyme 3B precursor|AMY1.6|AMY3B|Amy1.6 protein taxon:39947 20080408 GR #------------ # GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 2 2070 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field GR_PROTEIN Q9SC76 l1332.2 GO:0005515 GR_REF:8030 RCA InterPro:IPR000626|InterPro:IPR003103 F Hypothetical protein l1332.2 LOC_Os04g52890|Os04g0619900 protein taxon:4530 20060831 GR 2071 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field GR_PROTEIN Q9LWV5 P0425F02.41 GO:0005515 GR_REF:8030 RCA InterPro:IPR000626|InterPro:IPR003103 F BAG domain containing protein-like LOC_Os06g03640|Os06g0126500 protein taxon:39947 20060831 GR #------------ # GO_AR:0000006 IEP usage is restricted to terms from the Biological Process ontology Warning count: 61 497 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P46609 OSH1 GO:0003700 GR_REF:2697|PMID:8104574 IEP F Homeobox protein OSH1 protein taxon:39947 20060831 GR 878 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01401 SBE1 GO:0003844 GR_REF:1979|PMID:8455548 IEP F 1,4-alpha-glucan branching enzyme, chloroplast precursor Q-enzyme|Starch branching enzyme protein taxon:39947 20060831 GR 882 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN O48653 Os01g0868300, LOC_Os01g64820 GO:0003896 GR_REF:5160|PMID:9491803 IEP F DNA polymerase alpha catalytic subunit protein taxon:39947 20060831 GR 1040 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q08479 ADK-A GO:0004017 GR_REF:1971|PMID:1302636 IEP F Adenylate kinase A ATP-AMP transphosphorylase protein taxon:4530 20060831 GR 1044 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q08480 ADK-B GO:0004017 GR_REF:1971|PMID:1302636 IEP F Adenylate kinase B ATP-AMP transphosphorylase protein taxon:4530 20060831 GR 1111 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P37833 Os01g0760600, LOC_Os01g55540 GO:0004069 GR_REF:4197|PMID:9039500 IEP F Aspartate aminotransferase, cytoplasmic Transaminase A protein taxon:39947 20060831 GR 1229 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q40677 Os11g0171300, LOC_Os11g07020 GO:0004332 GR_REF:4629|PMID:8163192 IEP F Fructose-bisphosphate aldolase, chloroplast precursor ALDP protein taxon:4530 20060831 GR 1231 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P17784 FBA GO:0004332 GR_REF:1394|PMID:2374721 IEP F Fructose-bisphosphate aldolase cytoplasmic isozyme protein taxon:39947 20060831 GR 1240 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P42862 Os03g0776000, LOC_Os03g56460 GO:0004347 GR_REF:3216|PMID:8722567 IEP F Glucose-6-phosphate isomerase, cytosolic A PGI-A|Phosphoglucose isomerase A|Phosphohexose isomerase A|GPI-A|PHI- A protein taxon:4530 20060831 GR 1244 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P42863 Os06g0256500, LOC_Os06g14510 GO:0004347 GR_REF:3216|PMID:8722567 IEP F Glucose-6-phosphate isomerase, cytosolic B PHI- B|GPI-B|PGI-B|Phosphohexose isomerase B|Phosphoglucose isomerase B protein taxon:4530 20060831 GR 1269 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q9SB03 Waxy GO:0004373 GR_REF:1430|PMID:9718725 IEP F Waxy GBSS|glycogen [starch] synthase|glutinous endosperm|Granule-bound glycogen synthase|Granule-bound glycogen [starch] synthase, chloroplast precursor|UDPG-glycogen transglucosylase|glycogen [starch] synthetase|UDP-glycogen synthase|Waxy|uridine diphosphoglucose-glycogen glucosyltransferase|UDPG-glycogen synthetase protein taxon:39947 20060831 GR 1271 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q9XHN9 WX GO:0004373 GR_REF:986|PMID:9747848 IEP F Granule-bound starch synthase GBSS|LOC_Os06g04200|glycogen [starch] synthase|glutinous endosperm|Granule-bound glycogen synthase|Granule-bound glycogen [starch] synthase, chloroplast precursor|UDPG-glycogen transglucosylase|glycogen [starch] synthetase|UDP-glycogen synthase|Waxy|Os06g0133000|uridine diphosphoglucose-glycogen glucosyltransferase|UDPG-glycogen synthetase protein taxon:39947 20060831 GR 1272 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q9XHN9 WX GO:0004373 GR_REF:2348|PMID:10480395 IEP F Granule-bound starch synthase GBSS|LOC_Os06g04200|glycogen [starch] synthase|glutinous endosperm|Granule-bound glycogen synthase|Granule-bound glycogen [starch] synthase, chloroplast precursor|UDPG-glycogen transglucosylase|glycogen [starch] synthetase|UDP-glycogen synthase|Waxy|Os06g0133000|uridine diphosphoglucose-glycogen glucosyltransferase|UDPG-glycogen synthetase protein taxon:39947 20060831 GR 1405 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P27932 AMY1.2 GO:0004556 GR_REF:4298|PMID:1714318 IEP F Alpha-amylase isozyme 3A precursor 1,4-alpha-D- glucan glucanohydrolase|AMY3A protein taxon:39947 20060831 GR 1408 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P27937 Amy3B GO:0004556 GR_REF:4298|PMID:1714318 IEP F Alpha-amylase isozyme 3B precursor 1,4-alpha-D-glucan glucanohydrolase|Alpha-amylase isozyme 3B precursor|AMY1.6|AMY3B|Amy1.6 protein taxon:39947 20060831 GR 1411 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P27939 AMY1.7 GO:0004556 GR_REF:4298|PMID:1714318 IEP F Alpha-amylase isozyme 3C precursor 1,4-alpha-D-glucan glucanohydrolase|AMY3B protein taxon:39947 20060831 GR 1415 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P27934 AMY1.4 GO:0004556 GR_REF:1522|PMID:2263460 IEP F Alpha-amylase isozyme 3E precursor 1,4-alpha-D-glucan glucanohydrolase|AMY3E protein taxon:39947 20060831 GR 1890 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01881 RA5 GO:0004867 GR_REF:1733|PMID:1376283 IEP F Seed allergenic protein RA5 precursor protein taxon:4530 20060831 GR 1892 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01881 RA5 GO:0004867 GR_REF:97|PMID:7669811 IEP F Seed allergenic protein RA5 precursor protein taxon:4530 20060831 GR 1895 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01881 RA5 GO:0004867 GR_REF:26|PMID:7678765 IEP F Seed allergenic protein RA5 precursor protein taxon:4530 20060831 GR 1896 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01881 RA5 GO:0004867 GR_REF:98|PMID:7670192 IEP F Seed allergenic protein RA5 precursor protein taxon:4530 20060831 GR 1898 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01882 RAG2 GO:0004867 GR_REF:1733|PMID:1376283 IEP F Seed allergenic protein RAG2 precursor protein taxon:4530 20060831 GR 1901 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01882 RAG2 GO:0004867 GR_REF:97|PMID:7669811 IEP F Seed allergenic protein RAG2 precursor protein taxon:4530 20060831 GR 1903 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01882 RAG2 GO:0004867 GR_REF:26|PMID:7678765 IEP F Seed allergenic protein RAG2 precursor protein taxon:4530 20060831 GR 1906 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01882 RAG2 GO:0004867 GR_REF:98|PMID:7670192 IEP F Seed allergenic protein RAG2 precursor protein taxon:4530 20060831 GR 1907 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01883 RAG1 GO:0004867 GR_REF:1733|PMID:1376283 IEP F Seed allergenic protein RAG1 precursor protein taxon:4530 20060831 GR 1910 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01883 RAG1 GO:0004867 GR_REF:97|PMID:7669811 IEP F Seed allergenic protein RAG1 precursor protein taxon:4530 20060831 GR 1912 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01883 RAG1 GO:0004867 GR_REF:26|PMID:7678765 IEP F Seed allergenic protein RAG1 precursor protein taxon:4530 20060831 GR 1915 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01883 RAG1 GO:0004867 GR_REF:98|PMID:7670192 IEP F Seed allergenic protein RAG1 precursor protein taxon:4530 20060831 GR 2072 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q01859 ATPB GO:0005524 GR_REF:3792|PMID:1387558 IEP F ATP synthase subunit beta, mitochondrial precursor protein taxon:4530 20060831 GR 2083 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q08479 ADK-A GO:0005524 GR_REF:1971|PMID:1302636 IEP F Adenylate kinase A ATP-AMP transphosphorylase protein taxon:4530 20060831 GR 2086 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q08480 ADK-B GO:0005524 GR_REF:1971|PMID:1302636 IEP F Adenylate kinase B ATP-AMP transphosphorylase protein taxon:4530 20060831 GR 2550 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN O23810 Os09g0525500, LOC_Os09g35700 GO:0005548 GR_REF:1408|PMID:8704128 IEP F YY1 protein precursor protein taxon:4530 20060831 GR 2578 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN O48653 Os01g0868300, LOC_Os01g64820 GO:0005634 GR_REF:5160|PMID:9491803 IEP C DNA polymerase alpha catalytic subunit protein taxon:39947 20060831 GR 2586 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P46466 TBP2 GO:0005634 GR_REF:4302 IEP C 26S protease regulatory subunit 4 homolog TAT-binding protein homolog 2 protein taxon:39947 20060831 GR 2588 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P46465 TBP1 GO:0005634 GR_REF:4302 IEP C 26S protease regulatory subunit 6A homolog TBP-1|TAT-binding protein homolog 1 protein taxon:39947 20060831 GR 2589 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P37398 VP1 GO:0005634 GR_REF:6590|PMID:11917085 IEP C Protein viviparous homolog OsVP1|ABI3|Transcription activator VP1-rice protein taxon:4530 20060831 GR 2596 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q9FDX8 P0038C05.23 GO:0005634 GR_REF:5127|PMID:11148291 IEP C Hd1 Lm|K|Photoperiod-sensitivity-1|Heading date-1|Se1|Lf|P0038C05.14|Hd1|Os06g0275000|LOC_Os06g16370|Rs protein taxon:39947 20060831 GR 2745 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P46466 TBP2 GO:0005737 GR_REF:4302 IEP C 26S protease regulatory subunit 4 homolog TAT-binding protein homolog 2 protein taxon:39947 20060831 GR 2746 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P46465 TBP1 GO:0005737 GR_REF:4302 IEP C 26S protease regulatory subunit 6A homolog TBP-1|TAT-binding protein homolog 1 protein taxon:39947 20060831 GR 2836 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q35294 urf-rmc GO:0005739 GR_REF:1831|PMID:2148966 IEP C URF-RMC Chinsurah boro 2 cytoplasm|Chimeric atp6 gene|LOC_Osm1g00370|urf-rmc protein taxon:39946 20060831 GR 2861 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P37891 CBP3 GO:0005773 GR_REF:4865|PMID:8161571 IEP C Serine carboxypeptidase 3 precursor protein taxon:39947 20060831 GR 2862 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P37890 CBP1 GO:0005777 GR_REF:4865|PMID:8161571 IEP C Serine carboxypeptidase 1 precursor Carboxypeptidase C protein taxon:39947 20060831 GR 2864 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P52712 CBP31 GO:0005777 GR_REF:4866|PMID:7972496 IEP C Serine carboxypeptidase-like precursor protein taxon:39947 20060831 GR 2872 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P52712 CBP31 GO:0005789 GR_REF:4866|PMID:7972496 IEP C Serine carboxypeptidase-like precursor protein taxon:39947 20060831 GR 2875 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P42862 Os03g0776000, LOC_Os03g56460 GO:0005829 GR_REF:3216|PMID:8722567 IEP C Glucose-6-phosphate isomerase, cytosolic A PGI-A|Phosphoglucose isomerase A|Phosphohexose isomerase A|GPI-A|PHI- A protein taxon:4530 20060831 GR 2878 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P42863 Os06g0256500, LOC_Os06g14510 GO:0005829 GR_REF:3216|PMID:8722567 IEP C Glucose-6-phosphate isomerase, cytosolic B PHI- B|GPI-B|PGI-B|Phosphohexose isomerase B|Phosphoglucose isomerase B protein taxon:4530 20060831 GR 4639 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P25765 RCH10 GO:0008061 GR_REF:5366|PMID:2034221 IEP F Basic endochitinase 2 precursor protein taxon:4530 20060831 GR 4875 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P25765 RCH10 GO:0008843 GR_REF:5366|PMID:2034221 IEP F Basic endochitinase 2 precursor protein taxon:4530 20060831 GR 4944 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P15280 APS2 GO:0009501 GR_REF:111|PMID:2545704 IEP C ADP-glucose Pyrophosphorylase small subunit 2 AGPASE B|Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor|Os08g0345800, LOC_Os08g25734|Alpha-D-glucose-1-phosphate adenyl transferase|ADP-glucose synthase|ADP-glucose pyrophosphorylase protein taxon:4530 20060831 GR 4945 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P15280 APS2 GO:0009501 GR_REF:112|PMID:1847888 IEP C ADP-glucose Pyrophosphorylase small subunit 2 AGPASE B|Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor|Os08g0345800, LOC_Os08g25734|Alpha-D-glucose-1-phosphate adenyl transferase|ADP-glucose synthase|ADP-glucose pyrophosphorylase protein taxon:4530 20060831 GR 6873 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P29250 LOX1.1 GO:0016165 GR_REF:3269|PMID:1597177 IEP F Lipoxygenase 2 protein taxon:39947 20060831 GR 6878 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P38419 CM-LOX1 GO:0016166 GR_REF:3431|PMID:7508918 IEP F Lipoxygenase 7, chloroplast precursor protein taxon:4530 20060831 GR 6886 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P25765 RCH10 GO:0016231 GR_REF:5366|PMID:2034221 IEP F Basic endochitinase 2 precursor protein taxon:4530 20060831 GR 6938 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q84QK0 opda GO:0016629 GR_REF:8019|PMID:14559225 IEP F Oxo-phytodienoic acid reductase LOC_Os06g11290|Os06g0216300|OPR1|12-oxophytodienoate reductase|OPDA protein taxon:39947 20060831 GR 6989 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P42862 Os03g0776000, LOC_Os03g56460 GO:0016853 GR_REF:3216|PMID:8722567 IEP F Glucose-6-phosphate isomerase, cytosolic A PGI-A|Phosphoglucose isomerase A|Phosphohexose isomerase A|GPI-A|PHI- A protein taxon:4530 20060831 GR 6992 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN P42863 Os06g0256500, LOC_Os06g14510 GO:0016853 GR_REF:3216|PMID:8722567 IEP F Glucose-6-phosphate isomerase, cytosolic B PHI- B|GPI-B|PGI-B|Phosphohexose isomerase B|Phosphoglucose isomerase B protein taxon:4530 20060831 GR 7283 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN Q6ZHS4 OJ1145_F01.6 GO:0045551 GR_REF:11067|PMID:15452707 IEP F Putative cinnamyl-alcohol dehydrogenase LOC_Os02g09490|OJ1073_F05.31|SAD|Sinapyl alcohol dehydrogenase|CAD2|Cinnamyl alcohol dehydrogenase|OsCAD2|Os02g0187800|OJ1145_F01.6 protein taxon:39947 20060831 GR 8791 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN O48655 rsigA GO:0009536 GR_REF:4582|PMID:9421493 IEP C Sigma factor 1 OsSig1|LOC_Os08g06630|RsigA|Plastid RNA polymerase sigma factor|OsSigA|Os08g0163400|SigA protein taxon:39947 20070109 GR 8792 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN O48655 rsigA GO:0009536 GR_REF:11446|PMID:15118338 IEP C Sigma factor 1 OsSig1|LOC_Os08g06630|RsigA|Plastid RNA polymerase sigma factor|OsSigA|Os08g0163400|SigA protein taxon:39947 20070109 GR 10889 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology GR_PROTEIN O48653 Os01g0868300, LOC_Os01g64820 GO:0003887 GR_REF:5160|PMID:9491803 IEP F DNA polymerase alpha catalytic subunit protein taxon:39947 20060831 GR #------------ # GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 2 8681 GO_AR:0000008 Warning Do not annotate to: GO:0140110 'transcription regulator activity' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GR_PROTEIN Q58GE3 UDT1 GO:0140110 GR_REF:11269|PMID:16141453 ISS F Undeveloped tapetum 1 LOC_Os07g36460 protein taxon:39947 20060831 GR 8684 GO_AR:0000008 Warning Do not annotate to: GO:0140110 'transcription regulator activity' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate GR_PROTEIN Q84MM9 MOC1 GO:0140110 GR_REF:7848|PMID:12687001 ISS GR_REF:11420|UniProt:Q9ZSP2 F Protein MONOCULM 1 protein taxon:39947 20060831 GR #------------ # GO_AR:0000013 Taxon-appropriate annotation check Warning count: 1 12475 GO_AR:0000013 Warning Use of out-dated taxon identifier: NCBITaxon:389215 is replaced by NCBITaxon:4530 GR_PROTEIN A5X302 ALS GO:0009536 GR_REF:7047 RCA C Acetolactate synthase protein taxon:389215 20080620 GR #------------