Ontology Comparison Report
==========================

Files used:
- file 1 (old): [% f1_file_data %]
- file 2 (new): [% f2_file_data %]
subset: [% subset %]


NEW TERMS
=========
[% IF f2_only %]
ID	name	namespace[% IF subset %]	nearest ancestral subset term(s)[% END %]
[% 	FOREACH t IN f2_only.keys.sort;
 %][% t %]	[% f2_hash_data.$t.name.0 %]	[% f2_hash_data.$t.namespace.0 || '' %][% IF subset %]	[% f2.$t.anc.join(", ") %][% END %]
[% 	END;
	ELSE %]
None
[% END %]

OBSOLETIONS
===========
[% IF f2_obsoletes;
		FOREACH t IN f2_obsoletes.keys.sort;
 %][% t %], [% f2_hash_data.$t.name.0 %][% IF f1_hash_data.$t.namespace %] ([% f1_hash_data.$t.namespace.0 %])[% END %]
[% 	END;
	ELSE %]
None
[% END %]

TERM MERGES
===========
[% IF f1_to_f2_merge;
		FOREACH t IN f1_to_f2_merge.keys.sort;
			merge = f1_to_f2_merge.$t;
%][% t %], [% f1_hash_data.$t.name.0 %] was merged into [% merge %], [% f2_hash_data.$merge.name.0 %]
[% 	END;
	ELSE %]
None
[% END %]

TERM CHANGES
============
[% IF term_changes %]
KEY:  'A' : added, 'D' : deleted, 'C' : changed

Term ID	[%
		FOREACH a IN term_change_attribs;
			a _ '	';
		END %]
[%		FOREACH t IN term_changes.keys.sort;
			t _ ', ' _ f2_hash_data.$t.name.0 _ '	';
			FOREACH a IN term_change_attribs;
				IF term_changes.$t.d_hash.$a;
					term_changes.$t.d_hash.$a %]	[%
				ELSE;
					'	';
				END;
			END; %]
[%		END; ## term_changes
	ELSE %]
None
[% END %]

[% IF other && (other.f2_only || other.f1_only || other.both); %]
OTHER STANZA TYPES
==================
[% 	IF other.f2_only %]
New Stanzas
==========-

Stanza type	ID	Name
[% 		FOREACH s_type IN other.f2_only.keys.sort;
				FOREACH t IN other.f2_only.$s_type.keys.sort;
			%][% s_type %]	[% t %]	[% other.f2_only.$s_type.$t.name || '' %]
[% 			END;
			END %]

[%		END;
	 	IF other.f1_only %]
Stanzas removed
==============-

Stanza type	ID	Name
[% 		FOREACH s_type IN other.f1_only.keys.sort;
				FOREACH t IN other.f1_only.$s_type.keys.sort;
%][% s_type %]	[% t %]	[% other.f1_only.$s_type.$t.name || '' %]
[% 			END;
			END %]

[%		END;
		IF other.both %]
Stanzas Edited
==============

Stanza type	ID	Name
[% 		FOREACH s_type IN other.both.keys.sort;
				FOREACH t IN other.both.$s_type.keys.sort;
%][% s_type %]	[% t %]	[% other.both.$s_type.$t.name || '' %]
[% 			END;
			END %]
[%		END %]
[% END; ## other %]
FILE STATS
==========

Term counts for the old and new files

Ontology	Old file	New file	Change
[% sign = '+';
	FOREACH o IN ontology_list.keys;
		total_row = o.replace('_', ' ') _ "	";
		def_row = '	';
		IF f1_stats.by_ns.$o;
			total_row = total_row _ f1_stats.by_ns.$o.total _ "	";
			def_row = def_row _ "(" _ f1_stats.by_ns.$o.def _ " defined)	";
		ELSE;
			total_row = total_row _ '-	';
			def_row = def_row _ "	";
		END;

		IF f2_stats.by_ns.$o;
			total_row = total_row _ f2_stats.by_ns.$o.total _ "	";
			def_row = def_row _ "(" _ f2_stats.by_ns.$o.def _ " defined)	";
		ELSE;
			total_row = total_row _ '-	';
			def_row = def_row _ "	";
		END;

		IF delta.$o;
			IF delta.$o > 0;
				total_row = total_row _ sign ;
			END;
			total_row = total_row _ delta.$o;
		END;
		total_row %]
[%		def_row %]
[%	END %]
Obsolete	[% f1_stats.obs %]	[% f2_stats.obs %]	[% 
	IF delta.obs > 0; sign; END;
	delta.obs %]
	([% f1_stats.obs_percent %]% of total)	 ([% f2_stats.obs_percent %]% of total)

Totals	[% f1_stats.total %]	[% f2_stats.total %]	[% IF delta.total > 0; sign; END; delta.total %] ([% 
	IF delta.total_percent > 0; sign; END;
	delta.total_percent %]%)
	[% f1_stats.def_extant %] ([% f1_stats.def_extant_percent %]%) defined	[% f2_stats.def_extant %] ([% f2_stats.def_extant_percent %]%) defined


[% IF f1_only || f1_obsoletes || f2_to_f1_merge %]
FILE ERRORS
===========

[% IF f1_only %]
Terms lost
==========
ID	name	namespace
[% 	FOREACH t IN f1_only.keys.sort;
%][% t %]	[% f1_hash_data.$t.name.0 %]	[% f1_hash_data.$t.namespace.0 || '' %]
[% 	END;
	END;

	IF f1_obsoletes %]
Resurrections
=============
[% 	FOREACH t IN f1_obsoletes.keys.sort;
%][% t %], [% f2_hash_data.$t.name.0 %][% IF f2_hash_data.$t.namespace %] ([% f2_hash_data.$t.namespace.0 %])[% END %]
[% 	END;
	END;

	IF f2_to_f1_merge %]
Term splits
===========
[% 	FOREACH t IN f2_to_f1_merge.keys.sort;
			merge = f2_to_f1_merge.$t
%][% t %], [% f2_hash_data.$t.name.0 %] was split from [% merge %], [% f1_hash_data.$merge.name.0 %]
[% 	END;
	END;
END %]