• Summary (original)
• Report (original)
• OWLTools check (original)
• Predictions (original)
• Predictions (experimental) (original)

GAF summary

Found 13267 annotations in 13286 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000005 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000005) No ISS or ISS-related annotations to 'protein binding ; GO:0005515', there are 3 violations with type Error.

For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003) Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there are 3 violations with type Warning.

GAF Prediction Summary

No inferences or predictions to report.

Used Ontology Summary

go/extensions/go-gaf

Group: goa - Dataset: goa_dog_isoform

SUMMARY

This report generated on 2019-01-01

• Associations: 13267
• Lines in file (incl headers): 13309
• Lines skipped: 42

Contents

gorule-0000020

gorule-0000026

other

MESSAGES

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 2

Messages

• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0000060) -- UniProtKB F1PI70 B9D2 GO:0000060 GO_REF:0000024 ISS UniProtKB:P01137 P Transforming growth factor beta B9D2 protein taxon:9615 20141202 AgBase UniProtKB:F1PMQ2
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0033160) -- UniProtKB P33712 IGF1 GO:0033160 GO_REF:0000107 IEA UniProtKB:P05019|ensembl:ENSP00000376637 P Insulin-like growth factor I IGF1 protein taxon:9615 20181201 Ensembl UniProtKB:E2R442

gorule-0000026

IBA annotations must have been sourced from the PAINT inference pipeline

• total: 28

Messages

• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005829) -- UniProtKB E2QYC5 OSBPL3 GO:0005829 PMID:21873635 IBA PANTHER:PTN000104007|TAIR:locus:2083594|TAIR:locus:2148368|UniProtKB:P22059|UniProtKB:Q96SU4|UniProtKB:Q9BZF2|UniProtKB:Q9BZF3|UniProtKB:Q9H4L5 C Oxysterol-binding protein OSBPL3 protein taxon:9615 20180308 GO_Central UniProtKB:E2QYC7
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005886) -- UniProtKB E2QYC5 OSBPL3 GO:0005886 PMID:21873635 IBA PANTHER:PTN000104286|SGD:S000001115|UniProtKB:Q9BZF2|UniProtKB:Q9BZF3|UniProtKB:Q9H4L5 C Oxysterol-binding protein OSBPL3 protein taxon:9615 20180308 GO_Central UniProtKB:E2QYC7
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0008289) -- UniProtKB E2QYC5 OSBPL3 GO:0008289 PMID:21873635 IBA PANTHER:PTN000104007|SGD:S000000081|SGD:S000001043|SGD:S000001115|SGD:S000001711|SGD:S000002177|SGD:S000005763|SGD:S000006066 F Oxysterol-binding protein OSBPL3 protein taxon:9615 20180308 GO_Central UniProtKB:E2QYC7
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0015248) -- UniProtKB E2QYC5 OSBPL3 GO:0015248 PMID:21873635 IBA PANTHER:PTN000104007|SGD:S000000081|SGD:S000001115|SGD:S000002177|SGD:S000005763|SGD:S000006066|UniProtKB:P22059 F Oxysterol-binding protein OSBPL3 protein taxon:9615 20180308 GO_Central UniProtKB:E2QYC7
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0015485) -- UniProtKB E2QYC5 OSBPL3 GO:0015485 PMID:21873635 IBA PANTHER:PTN000861587|UniProtKB:Q9BZF2|UniProtKB:Q9H4L5 F Oxysterol-binding protein OSBPL3 protein taxon:9615 20180308 GO_Central UniProtKB:E2QYC7
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0016020) -- UniProtKB E2QYC5 OSBPL3 GO:0016020 PMID:21873635 IBA PANTHER:PTN000104007|UniProtKB:P22059 C Oxysterol-binding protein OSBPL3 protein taxon:9615 20180308 GO_Central UniProtKB:E2QYC7
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0032934) -- UniProtKB E2QYC5 OSBPL3 GO:0032934 PMID:21873635 IBA PANTHER:PTN000104007|TAIR:locus:2185163 F Oxysterol-binding protein OSBPL3 protein taxon:9615 20180308 GO_Central UniProtKB:E2QYC7
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0043231) -- UniProtKB E2QYC5 OSBPL3 GO:0043231 PMID:21873635 IBA PANTHER:PTN000104007|UniProtKB:Q96SU4|UniProtKB:Q9H0X9 C Oxysterol-binding protein OSBPL3 protein taxon:9615 20180308 GO_Central UniProtKB:E2QYC7
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0097038) -- UniProtKB E2QYC5 OSBPL3 GO:0097038 PMID:21873635 IBA PANTHER:PTN000104286|UniProtKB:Q9BZF2|UniProtKB:Q9BZF3|UniProtKB:Q9H4L5 C Oxysterol-binding protein OSBPL3 protein taxon:9615 20180308 GO_Central UniProtKB:E2QYC7
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0004610) -- UniProtKB E2R601 PGM3 GO:0004610 PMID:21873635 IBA MGI:MGI:97566|PANTHER:PTN000501647|SGD:S000000784|UniProtKB:O95394|UniProtKB:Q4WJF0 F Phosphoglucomutase 3 PGM3 protein taxon:9615 20170228 GO_Central UniProtKB:E2R5Z9
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0006048) -- UniProtKB E2R601 PGM3 GO:0006048 PMID:21873635 IBA FB:FBgn0036298|MGI:MGI:97566|PANTHER:PTN000501647|UniProtKB:O95394 P Phosphoglucomutase 3 PGM3 protein taxon:9615 20170228 GO_Central UniProtKB:E2R5Z9
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0030097) -- UniProtKB E2R601 PGM3 GO:0030097 PMID:21873635 IBA MGI:MGI:97566|PANTHER:PTN000501652 P Phosphoglucomutase 3 PGM3 protein taxon:9615 20170228 GO_Central UniProtKB:E2R5Z9
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005739) -- UniProtKB E2R9X3 SDHC GO:0005739 PMID:21873635 IBA MGI:MGI:1913302|PANTHER:PTN000104658|SGD:S000001624|UniProtKB:D0VWV4|UniProtKB:P0DKI0|UniProtKB:P0DKI1 C Succinate dehydrogenase complex subunit C SDHC protein taxon:9615 20181001 GO_Central UniProtKB:E2R9X4
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005749) -- UniProtKB E2R9X3 SDHC GO:0005749 PMID:21873635 IBA PANTHER:PTN000104658|SGD:S000001624|UniProtKB:D0VWV4|UniProtKB:P0DKI0|UniProtKB:P0DKI1 C Succinate dehydrogenase complex subunit C SDHC protein taxon:9615 20181001 GO_Central UniProtKB:E2R9X4
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0006121) -- UniProtKB E2R9X3 SDHC GO:0006121 PMID:21873635 IBA FB:FBgn0037873|PANTHER:PTN000104658|WB:WBGene00003225 P Succinate dehydrogenase complex subunit C SDHC protein taxon:9615 20181001 GO_Central UniProtKB:E2R9X4
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0008177) -- UniProtKB E2R9X3 SDHC GO:0008177 PMID:21873635 IBA EcoGene:EG10933|PANTHER:PTN002590622 F Succinate dehydrogenase complex subunit C SDHC protein taxon:9615 20181001 GO_Central UniProtKB:E2R9X4
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0009055) -- UniProtKB E2R9X3 SDHC GO:0009055 PMID:21873635 IBA EcoGene:EG10933|PANTHER:PTN002590622 F Succinate dehydrogenase complex subunit C SDHC protein taxon:9615 20181001 GO_Central UniProtKB:E2R9X4
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0009060) -- UniProtKB E2R9X3 SDHC GO:0009060 PMID:21873635 IBA EcoGene:EG10933|PANTHER:PTN002590622 P Succinate dehydrogenase complex subunit C SDHC protein taxon:9615 20181001 GO_Central UniProtKB:E2R9X4
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0020037) -- UniProtKB E2R9X3 SDHC GO:0020037 PMID:21873635 IBA EcoGene:EG10933|PANTHER:PTN002590622|UniProtKB:D0VWV4 F Succinate dehydrogenase complex subunit C SDHC protein taxon:9615 20181001 GO_Central UniProtKB:E2R9X4
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0001525) -- UniProtKB E2RGQ1 PTK2 GO:0001525 PMID:21873635 IBA MGI:MGI:95481|PANTHER:PTN001231249|RGD:628758 P Protein tyrosine kinase 2 PTK2 protein taxon:9615 20170228 GO_Central UniProtKB:E2RGP8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0004715) -- UniProtKB E2RGQ1 PTK2 GO:0004715 PMID:21873635 IBA FB:FBgn0000017|MGI:MGI:104908|MGI:MGI:1930958|MGI:MGI:95481|PANTHER:PTN001975310|UniProtKB:P00519|UniProtKB:Q05397|UniProtKB:Q14289|WB:WBGene00002213 F Protein tyrosine kinase 2 PTK2 protein taxon:9615 20170228 GO_Central UniProtKB:E2RGP8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005925) -- UniProtKB E2RGQ1 PTK2 GO:0005925 PMID:21873635 IBA MGI:MGI:95481|PANTHER:PTN002400754|RGD:3443|RGD:628758|UniProtKB:Q00944|UniProtKB:Q05397|UniProtKB:Q14289 C Protein tyrosine kinase 2 PTK2 protein taxon:9615 20170928 GO_Central UniProtKB:E2RGP8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0007173) -- UniProtKB E2RGQ1 PTK2 GO:0007173 PMID:21873635 IBA PANTHER:PTN001231249|RGD:628758 P Protein tyrosine kinase 2 PTK2 protein taxon:9615 20170228 GO_Central UniProtKB:E2RGP8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0030154) -- UniProtKB E2RGQ1 PTK2 GO:0030154 PMID:21873635 IBA PANTHER:PTN001975310|RGD:628758 P Protein tyrosine kinase 2 PTK2 protein taxon:9615 20170228 GO_Central UniProtKB:E2RGP8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0030155) -- UniProtKB E2RGQ1 PTK2 GO:0030155 PMID:21873635 IBA PANTHER:PTN001231249|UniProtKB:Q14289 P Protein tyrosine kinase 2 PTK2 protein taxon:9615 20170228 GO_Central UniProtKB:E2RGP8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0038083) -- UniProtKB E2RGQ1 PTK2 GO:0038083 PMID:21873635 IBA MGI:MGI:95481|PANTHER:PTN001975310|RGD:628758|UniProtKB:P00519|UniProtKB:Q14289 P Protein tyrosine kinase 2 PTK2 protein taxon:9615 20170228 GO_Central UniProtKB:E2RGP8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0042127) -- UniProtKB E2RGQ1 PTK2 GO:0042127 PMID:21873635 IBA MGI:MGI:87859|PANTHER:PTN001975310|UniProtKB:Q05397 P Protein tyrosine kinase 2 PTK2 protein taxon:9615 20170228 GO_Central UniProtKB:E2RGP8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0043197) -- UniProtKB E2RGQ1 PTK2 GO:0043197 PMID:21873635 IBA PANTHER:PTN000700474|RGD:3443|RGD:628758 C Protein tyrosine kinase 2 PTK2 protein taxon:9615 20170928 GO_Central UniProtKB:E2RGP8

other

• total: 0

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #13267 annotations in 13286 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000005 No ISS or ISS-related annotations to 'protein binding ; GO:0005515' Error count: 3
5854 GO_AR:0000005 Error No ISS or ISS-related annotations to 'protein binding ; GO:0005515' UniProtKB F1PI70 B9D2 GO:0005515 GO_REF:0000024 ISS UniProtKB:P01137 F Transforming growth factor beta B9D2 protein taxon:9615 20141202 AgBase UniProtKB:F1PMQ2
10002 GO_AR:0000005 Error No ISS or ISS-related annotations to 'protein binding ; GO:0005515' UniProtKB J9NTX5 CRTAP GO:0005515 GO_REF:0000024 ISS UniProtKB:Q90830 F Cartilage associated protein CRTAP protein taxon:9615 20180925 UniProt UniProtKB:E2RCK3
10251 GO_AR:0000005 Error No ISS or ISS-related annotations to 'protein binding ; GO:0005515' UniProtKB J9NVL9 PPIB GO:0005515 GO_REF:0000024 ISS UniProtKB:P24367 F Peptidyl-prolyl cis-trans isomerase PPIB protein taxon:9615 20180925 UniProt UniProtKB:F1PLV2
#------------
# GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 3
5854 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field UniProtKB F1PI70 B9D2 GO:0005515 GO_REF:0000024 ISS UniProtKB:P01137 F Transforming growth factor beta B9D2 protein taxon:9615 20141202 AgBase UniProtKB:F1PMQ2
10002 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field UniProtKB J9NTX5 CRTAP GO:0005515 GO_REF:0000024 ISS UniProtKB:Q90830 F Cartilage associated protein CRTAP protein taxon:9615 20180925 UniProt UniProtKB:E2RCK3
10251 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field UniProtKB J9NVL9 PPIB GO:0005515 GO_REF:0000024 ISS UniProtKB:P24367 F Peptidyl-prolyl cis-trans isomerase PPIB protein taxon:9615 20180925 UniProt UniProtKB:F1PLV2
#------------