• Summary (original)
• Report (original)
• OWLTools check (original)
• Predictions (original)
• Predictions (experimental) (original)

GAF summary

Found 5782 annotations in 5801 lines.

GAF Validation Summary

No errors, warnings, recommendations, inferences, or predictions to report.

Used Ontology Summary

go/extensions/go-gaf

Group: goa - Dataset: goa_cow_isoform

SUMMARY

This report generated on 2019-01-01

• Associations: 5782
• Lines in file (incl headers): 5802
• Lines skipped: 20

Contents

gorule-0000020

gorule-0000026

other

MESSAGES

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 1

Messages

• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0033160) -- UniProtKB P07455 IGF1 GO:0033160 GO_REF:0000107 IEA UniProtKB:P05019|ensembl:ENSP00000376637 P Insulin-like growth factor I variant 2 IGF1|IGF-I protein taxon:9913 20181201 Ensembl UniProtKB:F2X2F1

gorule-0000026

IBA annotations must have been sourced from the PAINT inference pipeline

• total: 7

Messages

• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0003009) -- UniProtKB G5E5D2 TNNI2 GO:0003009 PMID:21873635 IBA PANTHER:PTN001011175|UniProtKB:P48788 P TNNI2 protein TNNI2 protein taxon:9913 20170228 GO_Central UniProtKB:A5PJM2
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005861) -- UniProtKB G5E5D2 TNNI2 GO:0005861 PMID:21873635 IBA PANTHER:PTN000348305|RGD:62050|RGD:621765|UniProtKB:P19429|UniProtKB:P48788 C TNNI2 protein TNNI2 protein taxon:9913 20170228 GO_Central UniProtKB:A5PJM2
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0006936) -- UniProtKB G5E5D2 TNNI2 GO:0006936 PMID:21873635 IBA PANTHER:PTN000348305|WB:WBGene00006585 P TNNI2 protein TNNI2 protein taxon:9913 20170228 GO_Central UniProtKB:A5PJM2
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0060048) -- UniProtKB G5E5D2 TNNI2 GO:0060048 PMID:21873635 IBA PANTHER:PTN001011175|RGD:62052|UniProtKB:P19429 P TNNI2 protein TNNI2 protein taxon:9913 20170228 GO_Central UniProtKB:A5PJM2
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0000462) -- UniProtKB Q58CV6 RRP36 GO:0000462 PMID:21873635 IBA PANTHER:PTN000497661|SGD:S000005813 P Ribosomal RNA processing protein 36 homolog RRP36 protein taxon:9913 20170228 GO_Central UniProtKB:A6QNR1
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005730) -- UniProtKB Q58CV6 RRP36 GO:0005730 PMID:21873635 IBA PANTHER:PTN000497661|SGD:S000005813|UniProtKB:Q96EU6 C Ribosomal RNA processing protein 36 homolog RRP36 protein taxon:9913 20170228 GO_Central UniProtKB:A6QNR1
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0030686) -- UniProtKB Q58CV6 RRP36 GO:0030686 PMID:21873635 IBA PANTHER:PTN000497661|SGD:S000005813 C Ribosomal RNA processing protein 36 homolog RRP36 protein taxon:9913 20170228 GO_Central UniProtKB:A6QNR1

other

• total: 0

#Line number RuleID ViolationType Message Line
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# Validation for #5782 annotations in 5801 lines
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# No errors, warnings, or recommendations to report.