Table of contents
Summary
GAF summary
Found 34775 annotations in 34794 lines.
GAF Validation Summary
No errors, warnings, or recommendations to report.
Used Ontology Summary
go/extensions/go-gaf
GAF Prediction Summary
Found 8 predictions, see prediction file for details.
Used Ontology Summary
go/extensions/go-gaf
Report
SUMMARY
This report generated on 2019-01-01
- Associations: 34775
- Lines in file (incl headers): 34795
- Lines skipped: 20
Contents
gorule-0000008
gorule-0000020
other
MESSAGES
gorule-0000008
No annotations should be made to uninformative high level terms
Messages
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) --
UniProtKB A0A1L1RL66 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:A0A1D5PFN2
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) --
UniProtKB A0A1L1RL66 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:E1BZ76
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) --
UniProtKB Q9YGL6 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-2
- WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) --
UniProtKB Q9YGL6 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-3
gorule-0000020
Automatic repair of annotations to merged or obsoleted terms
Messages
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0004874) --
UniProtKB A0A1D5P3U2 AHR GO:0004874 PMID:21047992 IDA F Uncharacterized protein AHR protein taxon:9031 20150327 AgBase UniProtKB:F1NLX8
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0004874) --
UniProtKB A0A1D5P3U2 AHR GO:0004874 PMID:21134488 IDA F Uncharacterized protein AHR protein taxon:9031 20150327 AgBase UniProtKB:F1NLX8
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0004874) --
UniProtKB A0A1D5P3U2 AHR GO:0004874 PMID:9224771 IDA F Uncharacterized protein AHR protein taxon:9031 20150922 AgBase activated_by(CHEBI:34342),occurs_in(UBERON:0002113),occurs_in(UBERON:0002107) UniProtKB:F1NLX8
- WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0004874) --
UniProtKB A0A1D5P9S5 AHR1B GO:0004874 GO_REF:0000002 IEA InterPro:IPR033348 F Uncharacterized protein AHR1B protein taxon:9031 20181201 InterPro UniProtKB:F1NWS4
other
OWLTools check
#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #34775 annotations in 34794 lines
#------------
# No errors, warnings, or recommendations to report.
Predictions
GO:0032259 methylation AnnotationPropagation P GO:0046539 histamine N-methyltransferase activity IDA
GO:0097223 sperm part FoldBasedPredictor GO:0005623 cell part_of CL:0000019 sperm IDA
GO:0040012 regulation of locomotion FoldBasedPredictor GO:1990869 cellular response to chemokine happens_during GO:0048568 embryonic organ development has_end_location UBERON:0014783 cloacal muscle has_start_location UBERON:0002103 hindlimb regulates_o_results_in_movement_of CL:0000680 muscle precursor cell results_in_development_of UBERON:0014783 cloacal muscle IMP
GO:0072348 sulfur compound transport FoldBasedPredictor GO:0055085 transmembrane transport transports_or_maintains_localization_of CHEBI:8927 S-(2,4-dinitrophenyl)glutathione ISS
GO:0071705 nitrogen compound transport FoldBasedPredictor GO:0055085 transmembrane transport transports_or_maintains_localization_of CHEBI:8927 S-(2,4-dinitrophenyl)glutathione ISS
GO:0015711 organic anion transport FoldBasedPredictor GO:0055085 transmembrane transport transports_or_maintains_localization_of CHEBI:8927 S-(2,4-dinitrophenyl)glutathione ISS
GO:0098656 anion transmembrane transport FoldBasedPredictor GO:0055085 transmembrane transport transports_or_maintains_localization_of CHEBI:8927 S-(2,4-dinitrophenyl)glutathione ISS
GO:0005829 cytosol FoldBasedPredictor GO:0051219 phosphoprotein binding occurs_in GO:0005829 cytosol occurs_in UBERON:0000993 oviduct IPI
Predictions (experimental)