• Summary (original)
• Report (original)
• OWLTools check (original)
• Predictions (original)
• Predictions (experimental) (original)

GAF summary

Found 100862 annotations in 100881 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000011 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000011) ND annotations to root nodes only, there is one violation with type Warning.

GAF Prediction Summary

Found 10 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Group: goa - Dataset: goa_human_isoform

SUMMARY

This report generated on 2018-11-15

• Associations: 100862
• Lines in file (incl headers): 100920
• Lines skipped: 58

Contents

gorule-0000008

gorule-0000020

gorule-0000026

gorule-0000027

other

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 1

Messages

• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB Q8IUK5 PLXDC1 GO:0005622 PMID:15574754 NAS C Plexin domain-containing protein 1 PLXDC1|TEM3|TEM7 protein taxon:9606 20111215 UniProt UniProtKB:Q8IUK5-4

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 19

Messages

• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB O75469 NR1I2 GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Nuclear receptor subfamily 1 group I member 2 NR1I2|hCG_21777 protein taxon:9606 20181103 InterPro UniProtKB:H0Y8E2
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004882) -- UniProtKB P10275 AR GO:0004882 GO_REF:0000002 IEA InterPro:IPR001103 F Androgen receptor AR protein taxon:9606 20181103 InterPro UniProtKB:A0A087WUX9
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004882) -- UniProtKB P10275 AR GO:0004882 GO_REF:0000002 IEA InterPro:IPR001103 F Androgen receptor AR protein taxon:9606 20181103 InterPro UniProtKB:A0A087WZ66
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004882) -- UniProtKB P10275 AR GO:0004882 GO_REF:0000002 IEA InterPro:IPR001103 F Androgen receptor AR protein taxon:9606 20181103 InterPro UniProtKB:A0A087X1B6
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004882) -- UniProtKB P10275 AR GO:0004882 GO_REF:0000002 IEA InterPro:IPR001103 F Androgen receptor AR protein taxon:9606 20181103 InterPro UniProtKB:E9PEG3
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004882) -- UniProtKB P10275 AR GO:0004882 GO_REF:0000002 IEA InterPro:IPR001103 F Androgen receptor AR protein taxon:9606 20181103 InterPro UniProtKB:F5GZG9
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004882) -- UniProtKB P10275 AR NOT GO:0004882 PMID:19244107 IDA F Androgen receptor AR|DHTR|NR3C4 protein taxon:9606 20160202 UniProt UniProtKB:P10275-3
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003708) -- UniProtKB P10276 RARA GO:0003708 GO_REF:0000002 IEA InterPro:IPR003078 F Retinoic acid receptor alpha RARA protein taxon:9606 20181103 InterPro UniProtKB:J3KSJ4
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003708) -- UniProtKB P10276 RARA GO:0003708 GO_REF:0000002 IEA InterPro:IPR003078 F Retinoic acid receptor alpha RARA|hCG_2007196 protein taxon:9606 20181103 InterPro UniProtKB:A8MUP8
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003708) -- UniProtKB P10826 RARB GO:0003708 GO_REF:0000002 IEA InterPro:IPR003078 F Retinoic acid receptor beta RARB protein taxon:9606 20181103 InterPro UniProtKB:D6RBI3
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB P10827 THRA GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Thyroid hormone receptor alpha THRA protein taxon:9606 20181103 InterPro UniProtKB:J3QRA9
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB P10828 THRB GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Thyroid hormone receptor beta THRB protein taxon:9606 20181103 InterPro UniProtKB:A0A2R8YF24
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB P10828 THRB GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Thyroid hormone receptor beta THRB protein taxon:9606 20181103 InterPro UniProtKB:C9JNQ4
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0008434) -- UniProtKB P11473 VDR GO:0008434 GO_REF:0000002 IEA InterPro:IPR000324 F Vitamin D3 receptor VDR protein taxon:9606 20181103 InterPro UniProtKB:F8VPF8
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0008434) -- UniProtKB P11473 VDR GO:0008434 GO_REF:0000002 IEA InterPro:IPR000324 F Vitamin D3 receptor VDR protein taxon:9606 20181103 InterPro UniProtKB:F8VRJ4
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0008434) -- UniProtKB P11473 VDR GO:0008434 GO_REF:0000002 IEA InterPro:IPR000324 F Vitamin D3 receptor VDR protein taxon:9606 20181103 InterPro UniProtKB:F8VVY8
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB Q14994 NR1I3 GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Nuclear receptor subfamily 1 group I member 3 NR1I3 protein taxon:9606 20181103 InterPro UniProtKB:D6REZ7
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB Q14994 NR1I3 GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Nuclear receptor subfamily 1 group I member 3 NR1I3 protein taxon:9606 20181103 InterPro UniProtKB:E9PCF2
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0016534) -- UniProtKB Q15078 CDK5R1 GO:0016534 GO_REF:0000002 IEA InterPro:IPR004944 F Cyclin-dependent kinase 5 activator 1 CDK5R1 protein taxon:9606 20181103 InterPro UniProtKB:J3QRB5

gorule-0000026

IBA annotations must have been sourced from the PAINT inference pipeline

• total: 45

Messages

• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0003729) -- UniProtKB A0A1B0GTU1 ZC3H11B GO:0003729 PMID:21873635 IBA PANTHER:PTN000404523|TAIR:locus:2051683 F Zinc finger CCCH domain-containing protein 11B ZC3H11B protein taxon:9606 20171103 GO_Central UniProtKB:A0A1B0GUI2
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0016973) -- UniProtKB A0A1B0GTU1 ZC3H11B GO:0016973 PMID:21873635 IBA PANTHER:PTN000404523|UniProtKB:O75152 P Zinc finger CCCH domain-containing protein 11B ZC3H11B protein taxon:9606 20171103 GO_Central UniProtKB:A0A1B0GUI2
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0000346) -- UniProtKB A0A1B0GTU1 ZC3H11B colocalizes_with GO:0000346 PMID:21873635 IBA PANTHER:PTN000404523|UniProtKB:O75152 C Zinc finger CCCH domain-containing protein 11B ZC3H11B protein taxon:9606 20171103 GO_Central UniProtKB:A0A1B0GUI2
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0000028) -- UniProtKB A0A1W2PQS6 RPS10-NUDT3 GO:0000028 PMID:21873635 IBA PANTHER:PTN000254423|RGD:621024 P RPS10-NUDT3 readthrough RPS10-NUDT3 protein taxon:9606 20170228 GO_Central UniProtKB:S4R435
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0003735) -- UniProtKB A0A1W2PQS6 RPS10-NUDT3 GO:0003735 PMID:21873635 IBA PANTHER:PTN000254423|RGD:621024 F RPS10-NUDT3 readthrough RPS10-NUDT3 protein taxon:9606 20170228 GO_Central UniProtKB:S4R435
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0022627) -- UniProtKB A0A1W2PQS6 RPS10-NUDT3 GO:0022627 PMID:21873635 IBA PANTHER:PTN000254423|RGD:621024|TAIR:locus:2149579|UniProtKB:P46783|UniProtKB:Q9FFS8|UniProtKB:Q9SW09 C RPS10-NUDT3 readthrough RPS10-NUDT3 protein taxon:9606 20170228 GO_Central UniProtKB:S4R435
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0000137) -- UniProtKB H3BV12 GOLGA8Q GO:0000137 PMID:21873635 IBA FB:FBgn0034697|PANTHER:PTN000094136|RGD:620282|UniProtKB:Q08379 C Golgin subfamily A member 8Q GOLGA8Q protein taxon:9606 20170509 GO_Central UniProtKB:A0A0J9YX86
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005794) -- UniProtKB H3BV12 GOLGA8Q GO:0005794 PMID:21873635 IBA FB:FBgn0034697|MGI:MGI:2139395|PANTHER:PTN000094136|RGD:620282|UniProtKB:A7E2F4|UniProtKB:A8MQT2|UniProtKB:Q08379 C Golgin subfamily A member 8Q GOLGA8Q protein taxon:9606 20170509 GO_Central UniProtKB:A0A0J9YX86
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005801) -- UniProtKB H3BV12 GOLGA8Q GO:0005801 PMID:21873635 IBA MGI:MGI:2139395|PANTHER:PTN000094136|RGD:620282|UniProtKB:Q08379 C Golgin subfamily A member 8Q GOLGA8Q protein taxon:9606 20170509 GO_Central UniProtKB:A0A0J9YX86
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0007030) -- UniProtKB H3BV12 GOLGA8Q GO:0007030 PMID:21873635 IBA FB:FBgn0034697|PANTHER:PTN000094136 P Golgin subfamily A member 8Q GOLGA8Q protein taxon:9606 20170509 GO_Central UniProtKB:A0A0J9YX86
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0032580) -- UniProtKB H3BV12 GOLGA8Q GO:0032580 PMID:21873635 IBA PANTHER:PTN000094136|RGD:620282 C Golgin subfamily A member 8Q GOLGA8Q protein taxon:9606 20170509 GO_Central UniProtKB:A0A0J9YX86
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0051225) -- UniProtKB H3BV12 GOLGA8Q GO:0051225 PMID:21873635 IBA PANTHER:PTN000094175|UniProtKB:Q08379 P Golgin subfamily A member 8Q GOLGA8Q protein taxon:9606 20170509 GO_Central UniProtKB:A0A0J9YX86
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0003677) -- UniProtKB O75486 SUPT3H GO:0003677 PMID:21873635 IBA MGI:MGI:1913500|PANTHER:PTN000147049 F cDNA FLJ50351, highly similar to Transcription initiation protein SPT3 homolog SUPT3H protein taxon:9606 20170228 GO_Central UniProtKB:B4E1H0
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0003712) -- UniProtKB O75486 SUPT3H GO:0003712 PMID:21873635 IBA PANTHER:PTN000147049|SGD:S000002800 F cDNA FLJ50351, highly similar to Transcription initiation protein SPT3 homolog SUPT3H protein taxon:9606 20170228 GO_Central UniProtKB:B4E1H0
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005669) -- UniProtKB O75486 SUPT3H GO:0005669 PMID:21873635 IBA PANTHER:PTN000147049|SGD:S000004564|UniProtKB:Q15543 C cDNA FLJ50351, highly similar to Transcription initiation protein SPT3 homolog SUPT3H protein taxon:9606 20170228 GO_Central UniProtKB:B4E1H0
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0006357) -- UniProtKB O75486 SUPT3H GO:0006357 PMID:21873635 IBA PANTHER:PTN000147049|PomBase:SPCC61.02 P cDNA FLJ50351, highly similar to Transcription initiation protein SPT3 homolog SUPT3H protein taxon:9606 20170228 GO_Central UniProtKB:B4E1H0
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005786) -- UniProtKB P09132 SRP19 GO:0005786 PMID:21873635 IBA PANTHER:PTN000425880|SGD:S000004573|UniProtKB:P09132 C Signal recognition particle 19 kDa protein SRP19 protein taxon:9606 20170228 GO_Central UniProtKB:D6RBG4
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0006616) -- UniProtKB P09132 SRP19 GO:0006616 PMID:21873635 IBA PANTHER:PTN000425880|SGD:S000004573 P Signal recognition particle 19 kDa protein SRP19 protein taxon:9606 20170228 GO_Central UniProtKB:D6RBG4
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0006617) -- UniProtKB P09132 SRP19 GO:0006617 PMID:21873635 IBA PANTHER:PTN000425880|SGD:S000004573|UniProtKB:Q5A9A9 P Signal recognition particle 19 kDa protein SRP19 protein taxon:9606 20170228 GO_Central UniProtKB:D6RBG4
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0008312) -- UniProtKB P09132 SRP19 GO:0008312 PMID:21873635 IBA PANTHER:PTN000425879|SGD:S000004573|UniProtKB:P09132|UniProtKB:Q8I5P4 F Signal recognition particle 19 kDa protein SRP19 protein taxon:9606 20170228 GO_Central UniProtKB:D6RBG4
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0003697) -- UniProtKB P28715 BIVM-ERCC5 GO:0003697 PMID:21873635 IBA PANTHER:PTN000792422|UniProtKB:P28715 F BIVM-ERCC5 readthrough BIVM-ERCC5|ERCC5|ERCC5-202 protein taxon:9606 20170228 GO_Central UniProtKB:R4GMW8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0004520) -- UniProtKB P28715 BIVM-ERCC5 GO:0004520 PMID:21873635 IBA PANTHER:PTN000792422|UniProtKB:P28715 F BIVM-ERCC5 readthrough BIVM-ERCC5|ERCC5|ERCC5-202 protein taxon:9606 20170228 GO_Central UniProtKB:R4GMW8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005634) -- UniProtKB P28715 BIVM-ERCC5 GO:0005634 PMID:21873635 IBA PANTHER:PTN000792422|UniProtKB:P28715 C BIVM-ERCC5 readthrough BIVM-ERCC5|ERCC5|ERCC5-202 protein taxon:9606 20170228 GO_Central UniProtKB:R4GMW8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0006295) -- UniProtKB P28715 BIVM-ERCC5 GO:0006295 PMID:21873635 IBA PANTHER:PTN000792422|SGD:S000003490|UniProtKB:P28715 P BIVM-ERCC5 readthrough BIVM-ERCC5|ERCC5|ERCC5-202 protein taxon:9606 20170228 GO_Central UniProtKB:R4GMW8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005768) -- UniProtKB P42857 NSG1 GO:0005768 PMID:21873635 IBA MGI:MGI:109149|PANTHER:PTN002004166|RGD:1563944|RGD:2222 C Neuron-specific protein family member 1 NSG1 protein taxon:9606 20170228 GO_Central UniProtKB:A0A0A6YYJ2
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0016197) -- UniProtKB P42857 NSG1 GO:0016197 PMID:21873635 IBA PANTHER:PTN002004166|RGD:2222 P Neuron-specific protein family member 1 NSG1 protein taxon:9606 20170228 GO_Central UniProtKB:A0A0A6YYJ2
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0032051) -- UniProtKB P42857 NSG1 GO:0032051 PMID:21873635 IBA PANTHER:PTN002004166|UniProtKB:Q9NYX4 F Neuron-specific protein family member 1 NSG1 protein taxon:9606 20170228 GO_Central UniProtKB:A0A0A6YYJ2
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0048268) -- UniProtKB P42857 NSG1 GO:0048268 PMID:21873635 IBA PANTHER:PTN002004166|UniProtKB:Q9NYX4 P Neuron-specific protein family member 1 NSG1 protein taxon:9606 20170228 GO_Central UniProtKB:A0A0A6YYJ2
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0000145) -- UniProtKB Q2M3D2 EXOC3L2 GO:0000145 PMID:21873635 IBA MGI:MGI:3041195|PANTHER:PTN000480155|PomBase:SPCC1235.10c|SGD:S000001330|UniProtKB:Q94AI6 C Exocyst complex component 3-like protein 2 EXOC3L2 protein taxon:9606 20170228 GO_Central UniProtKB:A0A1C7CYX0
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0000149) -- UniProtKB Q2M3D2 EXOC3L2 GO:0000149 PMID:21873635 IBA PANTHER:PTN000480155|SGD:S000001330 F Exocyst complex component 3-like protein 2 EXOC3L2 protein taxon:9606 20170228 GO_Central UniProtKB:A0A1C7CYX0
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0006887) -- UniProtKB Q2M3D2 EXOC3L2 GO:0006887 PMID:21873635 IBA MGI:MGI:3041195|PANTHER:PTN000480155|SGD:S000001330 P Exocyst complex component 3-like protein 2 EXOC3L2 protein taxon:9606 20170228 GO_Central UniProtKB:A0A1C7CYX0
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0051601) -- UniProtKB Q2M3D2 EXOC3L2 GO:0051601 PMID:21873635 IBA PANTHER:PTN000480155|SGD:S000001330 P Exocyst complex component 3-like protein 2 EXOC3L2 protein taxon:9606 20170228 GO_Central UniProtKB:A0A1C7CYX0
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0000724) -- UniProtKB Q6ZVN7 SEM1 GO:0000724 PMID:21873635 IBA MGI:MGI:109238|PANTHER:PTN000423400 P 26S proteasome complex subunit SEM1 SEM1|C7orf76|DSS1|SHFDG1|SHFM1 protein taxon:9606 20170228 GO_Central UniProtKB:P60896
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005789) -- UniProtKB Q96PC5 MIA2 GO:0005789 PMID:21873635 IBA MGI:MGI:2443183|PANTHER:PTN000570072|UniProtKB:Q5JRA6 C Melanoma inhibitory activity protein 2 MIA2 protein taxon:9606 20170428 GO_Central UniProtKB:G3V599
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0006888) -- UniProtKB Q96PC5 MIA2 GO:0006888 PMID:21873635 IBA PANTHER:PTN000570072|UniProtKB:O15320|UniProtKB:Q5JRA6|UniProtKB:Q96PC5 P Melanoma inhibitory activity protein 2 MIA2 protein taxon:9606 20170428 GO_Central UniProtKB:G3V599
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0009306) -- UniProtKB Q96PC5 MIA2 GO:0009306 PMID:21873635 IBA FB:FBgn0031842|PANTHER:PTN000570072 P Melanoma inhibitory activity protein 2 MIA2 protein taxon:9606 20170428 GO_Central UniProtKB:G3V599
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0035459) -- UniProtKB Q96PC5 MIA2 GO:0035459 PMID:21873635 IBA PANTHER:PTN000570072|UniProtKB:O15320|UniProtKB:Q96PC5 P Melanoma inhibitory activity protein 2 MIA2 protein taxon:9606 20170428 GO_Central UniProtKB:G3V599
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0042954) -- UniProtKB Q96PC5 MIA2 GO:0042954 PMID:21873635 IBA PANTHER:PTN000570072|UniProtKB:Q5JRA6|UniProtKB:Q96PC5 F Melanoma inhibitory activity protein 2 MIA2 protein taxon:9606 20170428 GO_Central UniProtKB:G3V599
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0070971) -- UniProtKB Q96PC5 MIA2 GO:0070971 PMID:21873635 IBA FB:FBgn0031842|PANTHER:PTN000570072|UniProtKB:O15320|UniProtKB:Q5JRA6|UniProtKB:Q96PC5 C Melanoma inhibitory activity protein 2 MIA2 protein taxon:9606 20170428 GO_Central UniProtKB:G3V599
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0017121) -- UniProtKB Q9NRY6 PLSCR3 GO:0017121 PMID:21873635 IBA MGI:MGI:893575|PANTHER:PTN000582979|RGD:620521|UniProtKB:O15162|WB:WBGene00011935 P Phospholipid scramblase PLSCR3 protein taxon:9606 20170228 GO_Central UniProtKB:I3L3X5
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0017128) -- UniProtKB Q9NRY6 PLSCR3 GO:0017128 PMID:21873635 IBA PANTHER:PTN000582979|UniProtKB:O15162|WB:WBGene00011935 F Phospholipid scramblase PLSCR3 protein taxon:9606 20170228 GO_Central UniProtKB:I3L3X5
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0005768) -- UniProtKB Q9Y328 NSG2 GO:0005768 PMID:21873635 IBA MGI:MGI:109149|PANTHER:PTN002004166|RGD:1563944|RGD:2222 C Neuronal vesicle-trafficking-associated protein 2 NSG2 protein taxon:9606 20170228 GO_Central UniProtKB:E5RGE8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0016197) -- UniProtKB Q9Y328 NSG2 GO:0016197 PMID:21873635 IBA PANTHER:PTN002004166|RGD:2222 P Neuronal vesicle-trafficking-associated protein 2 NSG2 protein taxon:9606 20170228 GO_Central UniProtKB:E5RGE8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0032051) -- UniProtKB Q9Y328 NSG2 GO:0032051 PMID:21873635 IBA PANTHER:PTN002004166|UniProtKB:Q9NYX4 F Neuronal vesicle-trafficking-associated protein 2 NSG2 protein taxon:9606 20170228 GO_Central UniProtKB:E5RGE8
• ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources (GO:0048268) -- UniProtKB Q9Y328 NSG2 GO:0048268 PMID:21873635 IBA PANTHER:PTN002004166|UniProtKB:Q9NYX4 P Neuronal vesicle-trafficking-associated protein 2 NSG2 protein taxon:9606 20170228 GO_Central UniProtKB:E5RGE8

gorule-0000027

Each identifier in GAF is valid

• total: 15

Messages

• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (WormBase) -- UniProtKB Q5T9L3 WLS GO:0000139 PMID:24768165 IDA C Protein wntless homolog WLS|C1orf139|GPR177|UNQ85/PRO18667 protein taxon:9606 20160330 WormBase UniProtKB:Q5T9L3-1
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (WormBase) -- UniProtKB Q5T9L3 WLS GO:0005789 PMID:24768165 IDA C Protein wntless homolog WLS|C1orf139|GPR177|UNQ85/PRO18667 protein taxon:9606 20160330 WormBase UniProtKB:Q5T9L3-1
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (WormBase) -- UniProtKB Q5T9L3 WLS GO:0005886 PMID:24768165 IDA C Protein wntless homolog WLS|C1orf139|GPR177|UNQ85/PRO18667 protein taxon:9606 20160330 WormBase UniProtKB:Q5T9L3-2
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (WormBase) -- UniProtKB Q5T9L3 WLS GO:0031410 PMID:24768165 IDA C Protein wntless homolog WLS|C1orf139|GPR177|UNQ85/PRO18667 protein taxon:9606 20160330 WormBase UniProtKB:Q5T9L3-2
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (WormBase) -- UniProtKB Q99807 COQ7 GO:0000122 PMID:25961505 IMP P 5-demethoxyubiquinone hydroxylase, mitochondrial COQ7 protein taxon:9606 20150715 WormBase has_regulation_target(UniProtKB:Q9NZC7)|has_regulation_target(UniProtKB:P04179)|has_regulation_target(UniProtKB:Q16236)|has_regulation_target(UniProtKB:Q6FH11) UniProtKB:Q99807-1
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (WormBase) -- UniProtKB Q99807 COQ7 GO:0003682 PMID:25961505 IDA F 5-demethoxyubiquinone hydroxylase, mitochondrial COQ7 protein taxon:9606 20150715 WormBase UniProtKB:Q99807-1
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (WormBase) -- UniProtKB Q99807 COQ7 GO:0005634 PMID:25961505 IDA C 5-demethoxyubiquinone hydroxylase, mitochondrial COQ7 protein taxon:9606 20150715 WormBase UniProtKB:Q99807-1
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (WormBase) -- UniProtKB Q99807 COQ7 GO:0005739 PMID:25961505 IDA C 5-demethoxyubiquinone hydroxylase, mitochondrial COQ7 protein taxon:9606 20150715 WormBase UniProtKB:Q99807-2
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (WormBase) -- UniProtKB Q99807 COQ7 GO:0045944 PMID:25961505 IMP P 5-demethoxyubiquinone hydroxylase, mitochondrial COQ7 protein taxon:9606 20150715 WormBase has_regulation_target(UniProtKB:Q9UI32) UniProtKB:Q99807-1
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (WormBase) -- UniProtKB Q99807 COQ7 GO:2000377 PMID:25961505 IMP P 5-demethoxyubiquinone hydroxylase, mitochondrial COQ7 protein taxon:9606 20150715 WormBase occurs_in(GO:0005634) UniProtKB:Q99807-1
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (SYSCILIA_CCNET) -- UniProtKB Q9BPU9 B9D2 GO:0035869 PMID:15916950 IDA C B9 domain-containing protein 2 B9D2 protein taxon:9606 20140121 SYSCILIA_CCNET UniProtKB:M0QY88
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (SYSCILIA_CCNET) -- UniProtKB Q9BPU9 B9D2 GO:0035869 PMID:19208769 IDA C B9 domain-containing protein 2 B9D2 protein taxon:9606 20140121 SYSCILIA_CCNET UniProtKB:M0QY88
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (SYSCILIA_CCNET) -- UniProtKB Q9BPU9 B9D2 GO:0035869 PMID:21422230 IDA C B9 domain-containing protein 2 B9D2 protein taxon:9606 20140121 SYSCILIA_CCNET UniProtKB:M0QY88
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (SYSCILIA_CCNET) -- UniProtKB Q9BPU9 B9D2 GO:0035869 PMID:21763481 IDA C B9 domain-containing protein 2 B9D2 protein taxon:9606 20140121 SYSCILIA_CCNET UniProtKB:M0QY88
• WARNING - Invalid identifier: GORULE:0000027: assigned_by is not present in groups reference (SYSCILIA_CCNET) -- UniProtKB Q9BPU9 B9D2 GO:0036064 PMID:19208769 IDA C B9 domain-containing protein 2 B9D2 protein taxon:9606 20140121 SYSCILIA_CCNET UniProtKB:M0QY88

other

• total: 0

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #100862 annotations in 100881 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000011 ND annotations to root nodes only Warning count: 1
99452 GO_AR:0000011 Warning ND annotations to root require reference ID UniProtKB Q9Y4H4 GPSM3 GO:0003674 PMID:2259622 ND F G-protein-signaling modulator 3 GPSM3|G18.1a protein taxon:9606 20061026 UniProt UniProtKB:Q9Y4H5
#------------

GO:0005739 mitochondrion AnnotationPropagation C GO:0042407 cristae formation IMP
GO:0120012 intermembrane sphingolipid transfer AnnotationPropagation P GO:0120017 intermembrane ceramide transfer activity IDA
GO:0035627 ceramide transport AnnotationPropagation P GO:0120017 intermembrane ceramide transfer activity IDA
GO:0005623 cell AnnotationPropagation C GO:0006611 protein export from nucleus IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008236 serine-type peptidase activity IDA
GO:0007186 G protein-coupled receptor signaling pathway AnnotationPropagation P GO:0016520 growth hormone-releasing hormone receptor activity NAS
GO:0016311 dephosphorylation AnnotationPropagation P GO:0106018 phosphatidylinositol-3,5-bisphosphate phosphatase activity IDA
GO:0016925 protein sumoylation AnnotationPropagation P GO:0061665 SUMO ligase activity IDA
GO:0005623 cell AnnotationPropagation C GO:0051481 negative regulation of cytosolic calcium ion concentration IDA
GO:0005623 cell AnnotationPropagation C GO:0016558 protein import into peroxisome matrix IMP