• Summary (original)
• Report (original)
• OWLTools check (original)
• Predictions (original)
• Predictions (experimental) (original)

GAF summary

Found 13250 annotations in 13269 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000005 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000005) No ISS or ISS-related annotations to 'protein binding ; GO:0005515', there are 3 violations with type Error.

For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003) Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there are 3 violations with type Warning.

GAF Prediction Summary

No inferences or predictions to report.

Used Ontology Summary

go/extensions/go-gaf

Group: goa - Dataset: goa_dog_isoform

SUMMARY

This report generated on 2018-11-15

• Associations: 13250
• Lines in file (incl headers): 13262
• Lines skipped: 12

Contents

gorule-0000020

other

MESSAGES

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 5

Messages

• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003708) -- UniProtKB E2R2V0 RARA GO:0003708 GO_REF:0000002 IEA InterPro:IPR003078 F Retinoic acid receptor alpha RARA protein taxon:9615 20181103 InterPro UniProtKB:F1PN49
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003708) -- UniProtKB E2R7U1 ESRRG GO:0003708 GO_REF:0000002 IEA InterPro:IPR003078 F Estrogen related receptor gamma ESRRG protein taxon:9615 20181103 InterPro UniProtKB:J9NWD9
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB E2RCF6 NR1H4 GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Nuclear receptor subfamily 1 group H member 4 NR1H4 protein taxon:9615 20181103 InterPro UniProtKB:J9P1S1
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0008434) -- UniProtKB F1PKD9 VDR GO:0008434 GO_REF:0000002 IEA InterPro:IPR000324 F Vitamin D receptor VDR protein taxon:9615 20181103 InterPro UniProtKB:J9NXL4
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB F1Q075 NR1I2 GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Nuclear receptor subfamily 1 group I member 2 NR1I2 protein taxon:9615 20181103 InterPro UniProtKB:J9P062

other

• total: 0

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #13250 annotations in 13269 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000005 No ISS or ISS-related annotations to 'protein binding ; GO:0005515' Error count: 3
5844 GO_AR:0000005 Error No ISS or ISS-related annotations to 'protein binding ; GO:0005515' UniProtKB F1PI70 B9D2 GO:0005515 GO_REF:0000024 ISS UniProtKB:P01137 F Transforming growth factor beta B9D2 protein taxon:9615 20141202 AgBase UniProtKB:F1PMQ2
9995 GO_AR:0000005 Error No ISS or ISS-related annotations to 'protein binding ; GO:0005515' UniProtKB J9NTX5 CRTAP GO:0005515 GO_REF:0000024 ISS UniProtKB:Q90830 F Cartilage associated protein CRTAP protein taxon:9615 20180925 UniProt UniProtKB:E2RCK3
10244 GO_AR:0000005 Error No ISS or ISS-related annotations to 'protein binding ; GO:0005515' UniProtKB J9NVL9 PPIB GO:0005515 GO_REF:0000024 ISS UniProtKB:P24367 F Peptidyl-prolyl cis-trans isomerase PPIB protein taxon:9615 20180925 UniProt UniProtKB:F1PLV2
#------------
# GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 3
5844 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field UniProtKB F1PI70 B9D2 GO:0005515 GO_REF:0000024 ISS UniProtKB:P01137 F Transforming growth factor beta B9D2 protein taxon:9615 20141202 AgBase UniProtKB:F1PMQ2
9995 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field UniProtKB J9NTX5 CRTAP GO:0005515 GO_REF:0000024 ISS UniProtKB:Q90830 F Cartilage associated protein CRTAP protein taxon:9615 20180925 UniProt UniProtKB:E2RCK3
10244 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field UniProtKB J9NVL9 PPIB GO:0005515 GO_REF:0000024 ISS UniProtKB:P24367 F Peptidyl-prolyl cis-trans isomerase PPIB protein taxon:9615 20180925 UniProt UniProtKB:F1PLV2
#------------