• Summary (original)
• Report (original)
• OWLTools check (original)
• Predictions (original)
• Predictions (experimental) (original)

GAF summary

Found 26218 annotations in 26237 lines.

GAF Validation Summary

No errors, warnings, or recommendations to report.

Used Ontology Summary

go/extensions/go-gaf

GAF Prediction Summary

Found 7 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Group: goa - Dataset: goa_chicken_isoform

SUMMARY

This report generated on 2018-11-15

• Associations: 26218
• Lines in file (incl headers): 26235
• Lines skipped: 17

Contents

gorule-0000008

gorule-0000020

other

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 4

Messages

• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB A0A1L1RL66 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:A0A1D5PFN2
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB A0A1L1RL66 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:E1BZ76
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB Q9YGL6 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-2
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB Q9YGL6 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-3

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 14

Messages

• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003708) -- UniProtKB A0A1D5P5J4 RARA GO:0003708 GO_REF:0000002 IEA InterPro:IPR003078 F Retinoic acid receptor alpha RARA protein taxon:9031 20181103 InterPro UniProtKB:A0A1L1RU93
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:1902879) -- UniProtKB A0A1D5PB14 SMAD6 GO:1902879 PMID:21730158 IMP P Mothers against decapentaplegic homolog 6 SMAD6 protein taxon:9031 20150523 AgBase UniProtKB:R4GHC9
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB A0A1D5PCG7 THRA GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Thyroid hormone receptor alpha THRA protein taxon:9031 20181103 InterPro UniProtKB:A0A1D5PWY8
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0008434) -- UniProtKB A0A1D5PI18 VDR GO:0008434 GO_REF:0000002 IEA InterPro:IPR000324 F Vitamin D3 receptor VDR protein taxon:9031 20181103 InterPro UniProtKB:A0A1D5NUY7
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003708) -- UniProtKB A0A1D5PZJ8 LOC107051537 GO:0003708 GO_REF:0000002 IEA InterPro:IPR003078 F Uncharacterized protein LOC107051537 protein taxon:9031 20181103 InterPro UniProtKB:A0A1D5PFN9
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB A0A1D5PZJ8 LOC107051537 GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Uncharacterized protein LOC107051537 protein taxon:9031 20181103 InterPro UniProtKB:A0A1D5P802
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003708) -- UniProtKB A0A1D6UPS4 REV-ERBb GO:0003708 GO_REF:0000002 IEA InterPro:IPR003078 F REV-ERBb protein REV-ERBb|NR1D2 protein taxon:9031 20181103 InterPro UniProtKB:Q90970
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003708) -- UniProtKB P22448 RARB GO:0003708 GO_REF:0000002 IEA InterPro:IPR003078 F Retinoic acid receptor beta RARB protein taxon:9031 20181103 InterPro UniProtKB:A0A1D5P5H4
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003708) -- UniProtKB P22448 RARB GO:0003708 GO_REF:0000002 IEA InterPro:IPR003078 F Retinoic acid receptor beta RARB protein taxon:9031 20181103 InterPro UniProtKB:A0A1D5PHS6
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003708) -- UniProtKB P22448 RARB GO:0003708 GO_REF:0000002 IEA InterPro:IPR003078 F Retinoic acid receptor beta RARB protein taxon:9031 20181103 InterPro UniProtKB:A0A1N8XGG5
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB P68306 THRB GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Thyroid hormone receptor beta THRB protein taxon:9031 20181103 InterPro UniProtKB:A0A1D5PCQ4
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB P68306 THRB GO:0004887 GO_REF:0000002 IEA InterPro:IPR001728 F Thyroid hormone receptor beta THRB protein taxon:9031 20181103 InterPro UniProtKB:A0A1I7Q415
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB P68306 THRB GO:0004887 GO_REF:0000107 IEA UniProtKB:P10828|ensembl:ENSP00000379904 F Thyroid hormone receptor beta THRB protein taxon:9031 20181103 Ensembl UniProtKB:F1NWE9
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004887) -- UniProtKB P68306 THRB GO:0004887 GO_REF:0000107 IEA UniProtKB:P37242|ensembl:ENSMUSP00000022304 F Thyroid hormone receptor beta THRB protein taxon:9031 20181103 Ensembl UniProtKB:F1NWE9

other

• total: 0

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #26218 annotations in 26237 lines
#------------
# No errors, warnings, or recommendations to report.

GO:0032259 methylation AnnotationPropagation P GO:0046539 histamine N-methyltransferase activity IDA
GO:0008144 drug binding FoldBasedPredictor GO:1990239 steroid hormone binding has_direct_input CHEBI:17026 progesterone occurs_in UBERON:0000993 oviduct ISS
GO:0005634 nucleus FoldBasedPredictor GO:1902596 negative regulation of DNA replication origin binding occurs_in GO:0005634 nucleus IMP
GO:0097458 neuron part FoldBasedPredictor GO:0045177 apical part of cell adjacent_to GO:0032421 stereocilium bundle part_of CL:0000202 auditory hair cell part_of UBERON:0001844 cochlea IDA
GO:0097223 sperm part FoldBasedPredictor GO:0005623 cell part_of CL:0000019 sperm IDA
GO:0040012 regulation of locomotion FoldBasedPredictor GO:1990869 cellular response to chemokine happens_during GO:0048568 embryonic organ development has_end_location UBERON:0014783 cloacal muscle has_start_location UBERON:0002103 hindlimb regulates_o_results_in_movement_of CL:0000680 muscle precursor cell results_in_development_of UBERON:0014783 cloacal muscle IMP
GO:0005829 cytosol FoldBasedPredictor GO:0051219 phosphoprotein binding occurs_in GO:0005829 cytosol occurs_in UBERON:0000993 oviduct IPI