• Summary (original)
• Report (original)
• OWLTools check (original)
• Predictions (original)
• Predictions (experimental) (original)

GAF summary

Found 14 annotations in 29 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000018 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000018) IPI annotations require a With/From entry, there are 3 violations with type Warning.

GAF Prediction Summary

No inferences or predictions to report.

Used Ontology Summary

go/extensions/go-gaf

Group: goa - Dataset: goa_pig_complex

SUMMARY

This report generated on 2018-10-08

• Associations: 14
• Lines in file (incl headers): 26
• Lines skipped: 12

Contents

gorule-0000001

other

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.1 specifications

• total: 4

Messages

• ERROR - Unknown evidence class: Expecting a known ECO GAF code, e.g ISS (NO_MAPPING) -- ComplexPortal CPX-57 sodium_potassium_exchanging atpase complex GO:0010248 PMID:24688018 NO_MAPPING P Sodium:potassium-exchanging ATPase complex sodium:potassium ATPase alpha-beta-gamma complex|ATP1A1:ATP1B1:FXYD2|sodium:potassium pump|Na+/K+ ATPase alpha-beta-gamma complex|Na(+)/K(+)-ATPase pump|Na+/K+-exchanging ATPase complex|Na+/K+-ATPase pump|Na+/K+ pump|Na(+)/K(+) pump|Na(+)/K(+)-exchanging ATPase complex|sodium:potassium ATPase pump|Na(+)/K(+) ATPase alpha-beta-gamma complex protein_complex taxon:9823 20150629 ComplexPortal
• ERROR - Unknown evidence class: Expecting a known ECO GAF code, e.g ISS (NO_MAPPING) -- ComplexPortal CPX-57 sodium_potassium_exchanging atpase complex GO:0015078 PMID:24688018 NO_MAPPING F Sodium:potassium-exchanging ATPase complex sodium:potassium ATPase alpha-beta-gamma complex|ATP1A1:ATP1B1:FXYD2|sodium:potassium pump|Na+/K+ ATPase alpha-beta-gamma complex|Na(+)/K(+)-ATPase pump|Na+/K+-exchanging ATPase complex|Na+/K+-ATPase pump|Na+/K+ pump|Na(+)/K(+) pump|Na(+)/K(+)-exchanging ATPase complex|sodium:potassium ATPase pump|Na(+)/K(+) ATPase alpha-beta-gamma complex protein_complex taxon:9823 20150629 ComplexPortal
• ERROR - Unknown evidence class: Expecting a known ECO GAF code, e.g ISS (NO_MAPPING) -- ComplexPortal CPX-57 sodium_potassium_exchanging atpase complex GO:1901691 PMID:24688018 NO_MAPPING F Sodium:potassium-exchanging ATPase complex sodium:potassium ATPase alpha-beta-gamma complex|ATP1A1:ATP1B1:FXYD2|sodium:potassium pump|Na+/K+ ATPase alpha-beta-gamma complex|Na(+)/K(+)-ATPase pump|Na+/K+-exchanging ATPase complex|Na+/K+-ATPase pump|Na+/K+ pump|Na(+)/K(+) pump|Na(+)/K(+)-exchanging ATPase complex|sodium:potassium ATPase pump|Na(+)/K(+) ATPase alpha-beta-gamma complex protein_complex taxon:9823 20150629 ComplexPortal
• ERROR - Unknown evidence class: Expecting a known ECO GAF code, e.g ISS (NO_MAPPING) -- ComplexPortal CPX-57 sodium_potassium_exchanging atpase complex GO:1902600 PMID:24688018 NO_MAPPING P Sodium:potassium-exchanging ATPase complex sodium:potassium ATPase alpha-beta-gamma complex|ATP1A1:ATP1B1:FXYD2|sodium:potassium pump|Na+/K+ ATPase alpha-beta-gamma complex|Na(+)/K(+)-ATPase pump|Na+/K+-exchanging ATPase complex|Na+/K+-ATPase pump|Na+/K+ pump|Na(+)/K(+) pump|Na(+)/K(+)-exchanging ATPase complex|sodium:potassium ATPase pump|Na(+)/K(+) ATPase alpha-beta-gamma complex protein_complex taxon:9823 20150629 ComplexPortal

other

• total: 0

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #14 annotations in 29 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000018 IPI annotations require a With/From entry Warning count: 3
18 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-57 sodium_potassium_exchanging atpase complex GO:0005524 PMID:18075585 IPI F Sodium:potassium-exchanging ATPase complex sodium:potassium ATPase alpha-beta-gamma complex|ATP1A1:ATP1B1:FXYD2|sodium:potassium pump|Na+/K+ ATPase alpha-beta-gamma complex|Na(+)/K(+)-ATPase pump|Na+/K+-exchanging ATPase complex|Na+/K+-ATPase pump|Na+/K+ pump|Na(+)/K(+) pump|Na(+)/K(+)-exchanging ATPase complex|sodium:potassium ATPase pump|Na(+)/K(+) ATPase alpha-beta-gamma complex protein_complex taxon:9823 20150629 ComplexPortal
23 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-57 sodium_potassium_exchanging atpase complex GO:0030955 PMID:18075585 IPI F Sodium:potassium-exchanging ATPase complex sodium:potassium ATPase alpha-beta-gamma complex|ATP1A1:ATP1B1:FXYD2|sodium:potassium pump|Na+/K+ ATPase alpha-beta-gamma complex|Na(+)/K(+)-ATPase pump|Na+/K+-exchanging ATPase complex|Na+/K+-ATPase pump|Na+/K+ pump|Na(+)/K(+) pump|Na(+)/K(+)-exchanging ATPase complex|sodium:potassium ATPase pump|Na(+)/K(+) ATPase alpha-beta-gamma complex protein_complex taxon:9823 20150629 ComplexPortal
24 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-57 sodium_potassium_exchanging atpase complex GO:0031402 PMID:18075585 IPI F Sodium:potassium-exchanging ATPase complex sodium:potassium ATPase alpha-beta-gamma complex|ATP1A1:ATP1B1:FXYD2|sodium:potassium pump|Na+/K+ ATPase alpha-beta-gamma complex|Na(+)/K(+)-ATPase pump|Na+/K+-exchanging ATPase complex|Na+/K+-ATPase pump|Na+/K+ pump|Na(+)/K(+) pump|Na(+)/K(+)-exchanging ATPase complex|sodium:potassium ATPase pump|Na(+)/K(+) ATPase alpha-beta-gamma complex protein_complex taxon:9823 20150629 ComplexPortal
#------------