Table of contents

Summary

GAF summary

Found 39755 annotations in 39770 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 6 violations with type Warning.

GAF Prediction Summary

Found 123 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Report

Group: goa - Dataset: goa_human_rna

SUMMARY

This report generated on 2018-10-08

Contents

gorule-0000020

other

MESSAGES

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

other

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #39755 annotations in 39770 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 6
3386 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate RNAcentral URS00001DC04F_9606 URS00001DC04F_9606 GO:0005622 GO_REF:0000108 IEA GO:0010881 C Homo sapiens (human) hsa-miR-1-3p miRNA taxon:9606 20180908 GOC
3387 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate RNAcentral URS00001DC04F_9606 URS00001DC04F_9606 GO:0005622 GO_REF:0000108 IEA GO:0086094 C Homo sapiens (human) hsa-miR-1-3p miRNA taxon:9606 20180908 GOC
7688 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate RNAcentral URS00003B95DA_9606 URS00003B95DA_9606 GO:0005622 GO_REF:0000108 IEA GO:0038061 C Homo sapiens (human) hsa-miR-27a-3p miRNA taxon:9606 20180908 GOC
9697 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate RNAcentral URS00004C46CF_9606 URS00004C46CF_9606 GO:0005622 GO_REF:0000108 IEA GO:0038061 C Homo sapiens (human) hsa-miR-329-3p miRNA taxon:9606 20180908 GOC
9750 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate RNAcentral URS00004C9052_9606 URS00004C9052_9606 GO:0005622 GO_REF:0000108 IEA GO:0010881 C Homo sapiens (human) hsa-miR-133a-3p miRNA taxon:9606 20180908 GOC
11244 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate RNAcentral URS000059311D_9606 URS000059311D_9606 GO:0005622 GO_REF:0000108 IEA GO:0038061 C Homo sapiens (human) hsa-miR-27b-3p miRNA taxon:9606 20180908 GOC
#------------

Predictions

GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IMP
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IMP
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IMP
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0016441 posttranscriptional gene silencing AnnotationPropagation P GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA
GO:0034599 cellular response to oxidative stress FoldBasedPredictor GO:2000377 regulation of reactive oxygen species metabolic process occurs_in CL:0002495 fetal cardiomyocyte part_of GO:0034599 cellular response to oxidative stress ISS
GO:0097084 vascular smooth muscle cell development FoldBasedPredictor GO:1905065 positive regulation of vascular smooth muscle cell differentiation results_in_development_of CL:0002591 smooth muscle cell of the pulmonary artery IDA
GO:0061042 vascular wound healing FoldBasedPredictor GO:1905205 positive regulation of connective tissue replacement occurs_in UBERON:0000948 heart part_of GO:0033554 cellular response to stress part_of GO:0061042 vascular wound healing ISS
GO:0033554 cellular response to stress FoldBasedPredictor GO:1905205 positive regulation of connective tissue replacement occurs_in UBERON:0000948 heart part_of GO:0033554 cellular response to stress part_of GO:0061042 vascular wound healing ISS
GO:0035924 cellular response to vascular endothelial growth factor stimulus FoldBasedPredictor GO:2000352 negative regulation of endothelial cell apoptotic process occurs_in CL:0000071 blood vessel endothelial cell part_of GO:0035924 cellular response to vascular endothelial growth factor stimulus IMP
GO:0071560 cellular response to transforming growth factor beta stimulus FoldBasedPredictor GO:0140050 negative regulation of endocardial cushion to mesenchymal transition part_of GO:0071560 cellular response to transforming growth factor beta stimulus ISS
GO:0040011 locomotion FoldBasedPredictor GO:1904753 negative regulation of vascular associated smooth muscle cell migration part_of GO:0001666 response to hypoxia results_in_movement_of CL:0002591 smooth muscle cell of the pulmonary artery IDA
GO:0001666 response to hypoxia FoldBasedPredictor GO:1904753 negative regulation of vascular associated smooth muscle cell migration part_of GO:0001666 response to hypoxia results_in_movement_of CL:0002591 smooth muscle cell of the pulmonary artery IDA
GO:0071456 cellular response to hypoxia FoldBasedPredictor GO:1905460 negative regulation of vascular associated smooth muscle cell apoptotic process occurs_in CL:0002591 smooth muscle cell of the pulmonary artery part_of GO:0071456 cellular response to hypoxia IMP
GO:0044344 cellular response to fibroblast growth factor stimulus FoldBasedPredictor GO:1904706 negative regulation of vascular smooth muscle cell proliferation part_of GO:0044344 cellular response to fibroblast growth factor stimulus results_in_division_of CL:0002591 smooth muscle cell of the pulmonary artery ISS
GO:0030336 negative regulation of cell migration FoldBasedPredictor GO:1903231 mRNA binding involved in posttranscriptional gene silencing has_direct_input ENSEMBL:ENSG00000100034 part_of GO:0030336 negative regulation of cell migration part_of GO:0051497 negative regulation of stress fiber assembly IDA
GO:0051497 negative regulation of stress fiber assembly FoldBasedPredictor GO:1903231 mRNA binding involved in posttranscriptional gene silencing has_direct_input ENSEMBL:ENSG00000100034 part_of GO:0030336 negative regulation of cell migration part_of GO:0051497 negative regulation of stress fiber assembly IDA
GO:0036120 cellular response to platelet-derived growth factor stimulus FoldBasedPredictor GO:1904706 negative regulation of vascular smooth muscle cell proliferation part_of GO:0036120 cellular response to platelet-derived growth factor stimulus results_in_division_of CL:0002591 smooth muscle cell of the pulmonary artery IDA
GO:0040011 locomotion FoldBasedPredictor GO:2000545 negative regulation of endothelial cell chemotaxis to fibroblast growth factor results_in_movement_of CL:0002544 aortic endothelial cell IDA
GO:0071456 cellular response to hypoxia FoldBasedPredictor GO:1905932 positive regulation of vascular smooth muscle cell differentiation involved in phenotypic switching occurs_in CL:0002591 smooth muscle cell of the pulmonary artery part_of GO:0071456 cellular response to hypoxia IDA
GO:0030509 BMP signaling pathway FoldBasedPredictor GO:0070412 R-SMAD binding part_of GO:0030509 BMP signaling pathway IPI
GO:0040011 locomotion FoldBasedPredictor GO:1904753 negative regulation of vascular associated smooth muscle cell migration results_in_movement_of CL:0002539 aortic smooth muscle cell IDA
GO:0061042 vascular wound healing FoldBasedPredictor GO:1905205 positive regulation of connective tissue replacement occurs_in UBERON:0000948 heart part_of GO:0033554 cellular response to stress part_of GO:0061042 vascular wound healing ISS
GO:0033554 cellular response to stress FoldBasedPredictor GO:1905205 positive regulation of connective tissue replacement occurs_in UBERON:0000948 heart part_of GO:0033554 cellular response to stress part_of GO:0061042 vascular wound healing ISS
GO:0035924 cellular response to vascular endothelial growth factor stimulus FoldBasedPredictor GO:1904753 negative regulation of vascular associated smooth muscle cell migration part_of GO:0035924 cellular response to vascular endothelial growth factor stimulus IDA
GO:1904385 cellular response to angiotensin FoldBasedPredictor GO:1904706 negative regulation of vascular smooth muscle cell proliferation part_of GO:1904385 cellular response to angiotensin results_in_division_of CL:0002539 aortic smooth muscle cell IDA
GO:0071499 cellular response to laminar fluid shear stress FoldBasedPredictor GO:1905564 positive regulation of vascular endothelial cell proliferation part_of GO:0071499 cellular response to laminar fluid shear stress ISS
GO:0071456 cellular response to hypoxia FoldBasedPredictor GO:1905205 positive regulation of connective tissue replacement occurs_in UBERON:0000948 heart part_of GO:0071456 cellular response to hypoxia ISS
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity FoldBasedPredictor GO:0035195 gene silencing by miRNA regulates GO:0004693 cyclin-dependent protein serine/threonine kinase activity regulates_expression_of ENSEMBL:ENSG00000135446 IDA
GO:0048008 platelet-derived growth factor receptor signaling pathway FoldBasedPredictor GO:2000134 negative regulation of G1/S transition of mitotic cell cycle occurs_in CL:0002539 aortic smooth muscle cell part_of GO:0048008 platelet-derived growth factor receptor signaling pathway IDA

Predictions (experimental)