#Line number RuleID ViolationType Message Line #------------ # GAF Parser ERROR count: 0 #------------ # GAF Parser WARNING count: 50 45 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A6F1 carA Contributes_to GO:0004088 PMID:1827118 IMP F gene taxon:83333 20090223 EcoliWiki 50 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P00968 carB Contributes_to GO:0004088 PMID:14718657 IDA F gene taxon:83333 20120615 EcoliWiki 55 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P00968 carB Contributes_to GO:0004088 PMID:1737023 IGI EcoliWiki:carA F gene taxon:83333 20090122 EcoliWiki 182 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P06959 aceF Contributes_to GO:0004738 PMID:3903169 IDA F gene taxon:83333 20091016 EcoliWiki 350 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ACF4 hupB Contributes_to GO:0003677 PMID:10551881 IDA F gene taxon:83333 20100507 EcoliWiki 637 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A6Y1 ihfB Contributes_to GO:0043565 PMID:10551881 IDA F gene taxon:83333 20100507 EcoliWiki 765 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P76014 dhaL Contributes_to GO:0016740 PMID:11350937 IDA F gene taxon:83333 20110715 EcoliWiki 784 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A877 trpA Contributes_to GO:0004834 PMID:8463331 IDA F gene taxon:83333 20090818 EcoliWiki 790 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A879 trpB Contributes_to GO:0004834 PMID:8325869 IDA F gene taxon:83333 20090824 EcoliWiki 925 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AGD3 sodB Contributes_to GO:0004784 PMID:3022287 IMP F gene taxon:83333 20090316 EcoliWiki 945 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A6X7 ihfA Contributes_to GO:0043565 PMID:10551881 IDA F gene taxon:83333 20100507 EcoliWiki 1124 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P00452 nrdA Contributes_to GO:0004748 PMID:13973714 IDA F gene taxon:83333 20120615 EcoliWiki 1127 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P69924 nrdB Contributes_to GO:0004748 PMID:13973714 IDA F gene taxon:83333 20080917 EcoliWiki 1128 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P69924 nrdB Contributes_to GO:0004748 PMID:13973714 IDA F gene taxon:83333 20120615 EcoliWiki 1148 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFF0 nuoN Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1151 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFE8 nuoM Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1154 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P33607 nuoL Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1157 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFE4 nuoK Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1160 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFE0 nuoJ Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1164 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFD6 nuoI Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080722 EcoliWiki 1168 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFD4 nuoH Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1173 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P33602 nuoG Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080722 EcoliWiki 1176 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P33602 nuoG Contributes_to GO:0010181 PMID:7607227 IDA F gene taxon:83333 20080722 EcoliWiki 1179 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P31979 nuoF Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080722 EcoliWiki 1181 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P31979 nuoF Contributes_to GO:0010181 PMID:7607227 IDA F gene taxon:83333 20080722 EcoliWiki 1185 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFD1 nuoE Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1186 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFD1 nuoE Contributes_to GO:0010181 PMID:7607227 IDA F gene taxon:83333 20080419 EcoliWiki 1190 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P33599 nuoC Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080722 EcoliWiki 1195 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFC7 nuoB Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080722 EcoliWiki 1198 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFC3 nuoA Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20100621 EcoliWiki 1360 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AGD7 ffh Contributes_to GO:0003924 PMID:7612669 IDA F gene taxon:83333 20080805 EcoliWiki 1378 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P39452 nrdE Contributes_to GO:0004748 PMID:7809142 IGI EcoliWiki:nrdA|EcoliWiki:nrdB F gene taxon:83333 20110815 EcoliWiki 1382 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P37146 nrdF Contributes_to GO:0004748 PMID:7809142 IGI EcoliWiki:nrdA|EcoliWiki:nrdB F gene taxon:83333 20110815 EcoliWiki 1416 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P23845 cysN Contributes_to GO:0004781 PMID:2828368 IDA F gene taxon:83333 20110815 EcoliWiki 1420 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P21156 cysD Contributes_to GO:0004781 PMID:2828368 IDA F gene taxon:83333 20100510 EcoliWiki 1444 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P04993 recD Contributes_to GO:0004386 PMID:1618858 IDA F gene taxon:83333 20090811 EcoliWiki 1448 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P04993 recD Contributes_to GO:0008854 PMID:1618858 IDA F gene taxon:83333 20090811 EcoliWiki 1543 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFI2 parC Contributes_to GO:0003916 PMID:1334483 IDA F gene taxon:83333 20081208 EcoliWiki 1546 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFI2 parC Contributes_to GO:0003918 PMID:8227000 IDA F gene taxon:83333 20081208 EcoliWiki 1768 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P22731 livF Contributes_to GO:0015190 PMID:2195019 IDA F gene taxon:83333 20100507 EcoliWiki 1937 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A6E6 atpC Contributes_to GO:0046933 PMID:2863270 IDA F gene taxon:83333 20080731 EcoliWiki 1940 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ABB4 atpD Contributes_to GO:0046933 PMID:2863270 IDA F gene taxon:83333 20080731 EcoliWiki 1942 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ABA6 atpG Contributes_to GO:0046933 PMID:2863270 IDA F gene taxon:83333 20080731 EcoliWiki 1945 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ABB0 atpA Contributes_to GO:0046961 PMID:2863270 IDA F gene taxon:83333 20110815 EcoliWiki 1946 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ABA4 atpH Contributes_to GO:0046933 PMID:2863270 IDA F gene taxon:83333 20080731 EcoliWiki 1949 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ABA0 atpF Contributes_to GO:0046961 PMID:2863271 IMP F gene taxon:83333 20100621 EcoliWiki 1952 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P68699 atpE Contributes_to GO:0046961 PMID:2863271 IMP F gene taxon:83333 20100621 EcoliWiki 1955 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AB98 atpB Contributes_to GO:0046961 PMID:2863271 IMP F gene taxon:83333 20110815 EcoliWiki 2230 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A9N8 nrdG Contributes_to GO:0004748 PMID:8954104 IMP F gene taxon:83333 20120615 EcoliWiki 2234 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P28903 nrdD Contributes_to GO:0004748 PMID:8954104 IMP F gene taxon:83333 20120615 EcoliWiki #------------ #------------ # Validation for #25753 annotations in 25772 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 10 21946 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG13721 yccS GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Inner membrane protein YccS UniProtKB:P75870|PTN001577038 protein taxon:83333 20170420 GO_Central 22198 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG13141 dinB GO:0005515 PMID:21873635 IBA EcoGene:EG13141|MGI:MGI:1349767|PANTHER:PTN000117876|PomBase:SPCC553.07c F DNA polymerase IV UniProtKB:Q47155|PTN000118193 protein taxon:83333 20180216 GO_Central 22422 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG10461 htpG GO:0005515 PMID:21873635 IBA EcoGene:EG10461|PANTHER:PTN000163828 F Chaperone protein HtpG UniProtKB:P0A6Z3|PTN000163845 protein taxon:83333 20180918 GO_Central 22866 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG12906 yhfK GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Uncharacterized protein YhfK UniProtKB:P45537|PTN001577037 protein taxon:83333 20170420 GO_Central 23307 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG20044 dctA GO:0005515 PMID:21873635 IBA EcoGene:EG20044|PANTHER:PTN000238506 F Aerobic C4-dicarboxylate transport protein UniProtKB:P0A830|PTN000238526 protein taxon:83333 20170608 GO_Central 23809 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG12822 aaeB GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F p-hydroxybenzoic acid efflux pump subunit AaeB UniProtKB:P46481|PTN000775499 protein taxon:83333 20170420 GO_Central 24766 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG11891 yeeA GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Inner membrane protein YeeA UniProtKB:P33011|PTN002021269 protein taxon:83333 20170420 GO_Central 25100 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG13945 ydhK GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Uncharacterized transporter YdhK UniProtKB:P76186|PTN000775498 protein taxon:83333 20170420 GO_Central 25616 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG11953 mdtO GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Multidrug resistance protein MdtO UniProtKB:P32715|PTN001293374 protein taxon:83333 20170420 GO_Central 25635 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG10833 recQ GO:0005515 PMID:21873635 IBA EcoGene:EG10833|PANTHER:PTN001787175 F ATP-dependent DNA helicase RecQ UniProtKB:P15043|PTN001009465 protein taxon:83333 20180411 GO_Central #------------ # GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 81 408 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P23895 emrE GO:0006810 PMID:12356478 IDA P gene taxon:83333 20081201 EcoliWiki 669 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0A910 ompA GO:0006810 PMID:10636850 IDA P gene taxon:83333 20090309 EcoliWiki 883 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0AFS5 tqsA GO:0042710 PMID:16385049 IMP P gene taxon:83333 20110607 EcoliWiki 884 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0AFS5 tqsA GO:0006810 PMID:16385049 IMP P gene taxon:83333 20110607 EcoliWiki 1266 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P45562 xapB GO:0006810 PMID:7559336 ISA EcoliWiki:NupG P gene taxon:83333 20081110 EcoliWiki 1654 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P46481 aaeB GO:0006810 PMID:15489430 IMP P gene taxon:83333 20090127 EcoliWiki 1657 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P46482 aaeA GO:0006810 PMID:15489430 IGI EcoliWiki:aaeB P gene taxon:83333 20090127 EcoliWiki 1732 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P34749 hofQ GO:0006810 PMID:19011021 IMP P gene taxon:83333 20100506 EcoliWiki 1743 GO_AR:0000008 Warning Do not annotate to: GO:0071229 'cellular response to acid chemical' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P0AEJ4 envZ GO:0071229 PMID:20380141 IMP P gene taxon:83333 20100426 EcoliWiki 2129 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0AEX9 malE GO:0006810 PMID:2155217 IGI EcoliWiki:lamB|EcoliWiki:malF|EcoliWiki:malG|EcoliWiki:malK P gene taxon:83333 20110815 EcoliWiki 2160 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P14407 fumB GO:0042710 PMID:16385049 IMP P gene taxon:83333 20110607 EcoliWiki 3477 GO_AR:0000008 Warning Do not annotate to: GO:0016049 'cell growth' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0ABD8 accB GO:0016049 PMID:11956202 IMP P biotin carboxyl carrier protein accB|fabE|b3255|ECK3242 protein taxon:83333 20161026 CAFA 3642 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB Q46817 ghxQ GO:0006810 PMID:10986234 ISS P guanine/hypoxanthine transporter GhxQ ghxQ|b2885 (obsolete)|ygfR|b2884 (obsolete)|ygfQ|b4464|ECK2880 protein taxon:83333 20080818 EcoCyc 4159 GO_AR:0000008 Warning Do not annotate to: GO:0048518 'positive regulation of biological process' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0A894 rapZ GO:0048518 PMID:17824929 IMP P RNase adaptor protein rapZ|yhbJ|b3205|ECK3194 protein taxon:83333 20071001 EcoCyc 4548 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0ACL7 lldR GO:0042710 PMID:14731270 IMP P DNA-binding transcriptional dual regulator LldR lldR|lct|lctR|b3604|ECK3594 protein taxon:83333 20120501 EcoCyc 5596 GO_AR:0000008 Warning Do not annotate to: GO:0008152 'metabolic process' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P76440 preT GO:0008152 PMID:12952533 ISS P NAD-dependent dihydropyrimidine dehydrogenase subunit PreT preT|yeiT|b2146|ECK2139 protein taxon:83333 20061219 EcoCyc 6007 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0DP21 rpnD GO:0042710 PMID:16385049 IMP P recombination-promoting nuclease RpnD, N-terminal fragment rpnD|yjiP|b4338|ECK4329 protein taxon:83333 20061121 EcoCyc 6612 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P33352 yehP GO:0006928 PMID:17122336 IMP P VWA domain-containing protein YehP yehP|b2121|ECK2113 protein taxon:83333 20070221 EcoCyc 7431 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P31064 yedE GO:0006810 PMID:25638258 RCA P putative selenium transporter yedE|b1929|ECK1928 protein taxon:83333 20170403 EcoCyc 7707 GO_AR:0000008 Warning Do not annotate to: GO:0034401 'chromatin organization involved in regulation of transcription' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P0A6R3 fis GO:0034401 PMID:11812843 IDA P DNA-binding transcriptional dual regulator Fis fis|nbp|b3261|ECK3248 protein taxon:83333 20110712 EcoCyc 8102 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0ADT2 ygiB GO:0042710 PMID:14731270 IMP P DUF1190 domain-containing protein YgiB ygiB|b3037|ECK3028 protein taxon:83333 20121106 EcoCyc 8187 GO_AR:0000008 Warning Do not annotate to: GO:0001101 'response to acid chemical' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P36560 asr GO:0001101 PMID:10094685 IEP P acid shock protein asr|b1597|ECK1592 protein taxon:83333 20080808 EcoCyc 8188 GO_AR:0000008 Warning Do not annotate to: GO:0001101 'response to acid chemical' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P36560 asr GO:0001101 PMID:12670971 IMP P acid shock protein asr|b1597|ECK1592 protein taxon:83333 20080808 EcoCyc 8424 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P17115 gutQ GO:0042710 PMID:16385049 IMP P D-arabinose 5-phosphate isomerase GutQ gutQ|srlQ|b2708|ECK2703 protein taxon:83333 20061121 EcoCyc 9097 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P30176 ybiA GO:0006928 PMID:17122336 IMP P conserved protein YbiA ybiA|b0798|ECK0787 protein taxon:83333 20080410 EcoCyc 9586 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0AEB7 yoaB GO:0042710 PMID:14731270 IMP P RutC family protein YoaB yoaB|b1809|ECK1807 protein taxon:83333 20120618 EcoCyc 10374 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0ADS9 yggN GO:0042710 PMID:14731270 IMP P putative EcfF yggN|ecfF|b2958|ECK2953 protein taxon:83333 20120507 EcoCyc 10931 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P75876 rlmI GO:0042710 PMID:16385049 IMP P 23S rRNA m5C1962 methyltransferase rlmI|yccW|b0967|ECK0958 protein taxon:83333 20061121 EcoCyc 11348 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0A9U3 ybiT GO:0006810 PMID:11916677 RCA P ABC transporter ATP-binding protein YbiT ybiT|b0820|ECK0810 protein taxon:83333 20110221 EcoCyc 11695 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P05847 ttdA GO:0042710 PMID:16385049 IMP P L(+)-tartrate dehydratase subunit alpha ttdA|ygjA|b3061|ECK3051 protein taxon:83333 20061121 EcoCyc 11768 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P75962 ymfA GO:0006928 PMID:17122336 IMP P putative inner membrane protein ymfA|b1122|ECK1108 protein taxon:83333 20080410 EcoCyc 11910 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P76111 ydcZ GO:0006928 PMID:17122336 IMP P putative inner membrane protein ydcZ|b1447|ECK1441 protein taxon:83333 20080408 EcoCyc 12135 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P76474 arnF GO:0006810 PMID:17928292 IMP P undecaprenyl-phosphate-alpha-L-Ara4N flippase - ArnF subunit arnF|yfbJ|b2258|ECK2252 protein taxon:83333 20080801 EcoCyc 12795 GO_AR:0000008 Warning Do not annotate to: GO:0065007 'biological regulation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0AFW4 rnk GO:0065007 PMID:8596442 IMP P nucleoside diphosphate kinase regulator rnk|b0610|ECK0603 protein taxon:83333 20110525 EcoCyc 12802 GO_AR:0000008 Warning Do not annotate to: GO:0043492 'ATPase activity, coupled to movement of substances' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P75796 gsiA GO:0043492 PMID:16109926 IDA F glutathione ABC transporter ATP binding subunit GsiA gsiA|yliA|b0829|ECK0819 protein taxon:83333 20160731 EcoCyc 13750 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0AFB5 glnL GO:0005622 PMID:3536843 IDA C sensory histidine kinase NtrB glnL|glnR|ntrB|b3869|ECK3862 protein taxon:83333 20101021 EcoCyc 13888 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P77726 yajR GO:0006810 PMID:23950222 IDA P putative major facilitator superfamily transport protein YajR yajR|b0427|ECK0421 protein taxon:83333 20131002 EcoCyc 14240 GO_AR:0000008 Warning Do not annotate to: GO:0001101 'response to acid chemical' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P0A9W6 ibaG GO:0001101 PMID:22534295 IEP P acid stress protein IbaG ibaG|yrbA|b3190|ECK3179 protein taxon:83333 20120510 EcoCyc 14529 GO_AR:0000008 Warning Do not annotate to: GO:0043492 'ATPase activity, coupled to movement of substances' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P15031 fecE GO:0043492 PMID:2651410 RCA F ferric citrate ABC transporter ATP binding subunit fecE|b4287|ECK4277 protein taxon:83333 20160711 EcoCyc 14796 GO_AR:0000008 Warning Do not annotate to: GO:0051338 'regulation of transferase activity' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P0A8A4 ppsR GO:0051338 PMID:20044937 IDA P PEP synthetase regulatory protein ppsR|ydiA|b1703|ECK1701 protein taxon:83333 20100114 EcoCyc 15096 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P32139 yihR GO:0042710 PMID:16385049 IMP P putative aldose-1-epimerase YihR yihR|squR|b3879|ECK3872 protein taxon:83333 20061121 EcoCyc 15276 GO_AR:0000008 Warning Do not annotate to: GO:0008152 'metabolic process' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P24203 yjiA GO:0008152 PMID:24449932 IDA P P-loop guanosine triphosphatase yjiA|b4352|ECK4342 protein taxon:83333 20140127 EcoCyc 15318 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0ABZ6 surA GO:0042710 PMID:18180259 IMP P peptidyl-prolyl cis-trans isomerase SurA surA|b0053|ECK0054 protein taxon:83333 20080630 EcoCyc 15539 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0ADR0 yqaA GO:0006928 PMID:17122336 IMP P DedA family protein YqaA yqaA|b2689|ECK2684 protein taxon:83333 20080409 EcoCyc 16125 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P08194 glpT GO:0006810 PMID:14519998 IGI P sn-glycerol 3-phosphate:phosphate antiporter glpT|b2240|ECK2232 protein taxon:83333 20071107 EcoCyc 16126 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P75993 ariR GO:0042710 PMID:17765265 IMP P regulator of acid resistance, influenced by indole ariR|ymgB|b1166|ECK1153 protein taxon:83333 20070925 EcoCyc 16256 GO_AR:0000008 Warning Do not annotate to: GO:0001101 'response to acid chemical' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P24169 speF GO:0001101 PMID:1939141 IEP P ornithine decarboxylase, degradative speF|b0693|ECK0681 protein taxon:83333 20130514 EcoCyc 16298 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0AB40 bhsA GO:0042710 PMID:17293424 IMP P DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA bhsA|ycfR|comC|b1112|ECK1098 protein taxon:83333 20070315 EcoCyc 16515 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P75906 pgaB GO:0042710 PMID:15090514 IMP P poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase pgaB|hmsF|ycdR|b1023|ECK1013 protein taxon:83333 20080731 EcoCyc 16708 GO_AR:0000008 Warning Do not annotate to: GO:0001101 'response to acid chemical' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P39297 bsmA GO:0001101 PMID:19833773 IMP P DUF1471 domain-containing putative lipoprotein BsmA bsmA|yjfO|b4189|ECK4185 protein taxon:83333 20091217 EcoCyc 16770 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P37642 yhjD GO:0006810 PMID:18093093 IGI P putative lipid IV exporter family transporter YhjD yhjD|b3522|ECK3507 protein taxon:83333 20160518 EcoCyc 16771 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P33997 alpA GO:0042710 PMID:16385049 IGI UniProtKB:P0AFS5 P CP4-57 prophage; DNA-binding transcriptional activator AlpA alpA|b2624|ECK2620 protein taxon:83333 20090714 EcoCyc 16772 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P33997 alpA GO:0042710 PMID:16385049 IEP P CP4-57 prophage; DNA-binding transcriptional activator AlpA alpA|b2624|ECK2620 protein taxon:83333 20090714 EcoCyc 16982 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P64442 yceO GO:0042710 PMID:16385049 IMP P DUF2770 domain-containing protein YceO yceO|b1058|ECK1043 protein taxon:83333 20061121 EcoCyc 17017 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P25889 preA GO:0006928 PMID:17122336 IMP P NAD-dependent dihydropyrimidine dehydrogenase subunit PreA preA|yeiA|b2147|ECK2140 protein taxon:83333 20061219 EcoCyc 17018 GO_AR:0000008 Warning Do not annotate to: GO:0008152 'metabolic process' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P25889 preA GO:0008152 PMID:11574054 ISS P NAD-dependent dihydropyrimidine dehydrogenase subunit PreA preA|yeiA|b2147|ECK2140 protein taxon:83333 20061219 EcoCyc 17324 GO_AR:0000008 Warning Do not annotate to: GO:0051347 'positive regulation of transferase activity' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P76194 sufE GO:0051347 PMID:12941942 IDA P sulfur acceptor for SufS cysteine desulfurase sufE|ynhA|b1679|ECK1675 protein taxon:83333 20131111 EcoCyc 17819 GO_AR:0000008 Warning Do not annotate to: GO:0071229 'cellular response to acid chemical' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P37630 yhiM GO:0071229 PMID:22327802 IMP P inner membrane protein with a role in acid resistance yhiM|b3491|ECK3476 protein taxon:83333 20120304 EcoCyc 17820 GO_AR:0000008 Warning Do not annotate to: GO:0071229 'cellular response to acid chemical' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P37630 yhiM GO:0071229 PMID:12426343 IEP P inner membrane protein with a role in acid resistance yhiM|b3491|ECK3476 protein taxon:83333 20120304 EcoCyc 18084 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P75994 ymgC GO:0042710 PMID:17765265 IMP P protein YmgC ymgC|b1167|ECK1154 protein taxon:83333 20070925 EcoCyc 18251 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P14407 fumB GO:0042710 PMID:16385049 IMP P fumarase B fumB|b4122|ECK4115 protein taxon:83333 20061121 EcoCyc 18265 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P69434 pgaA GO:0006810 PMID:18359807 IMP P partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine outer membrane porin pgaA|hmsH|ycdS|b1024|ECK1014 protein taxon:83333 20080731 EcoCyc 18267 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P69434 pgaA GO:0042710 PMID:15090514 IMP P partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine outer membrane porin pgaA|hmsH|ycdS|b1024|ECK1014 protein taxon:83333 20080731 EcoCyc 18596 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P77804 ydgA GO:0006928 PMID:17122336 IMP P conserved protein YdgA ydgA|b1614|ECK1609 protein taxon:83333 20080409 EcoCyc 18602 GO_AR:0000008 Warning Do not annotate to: GO:0065007 'biological regulation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0AEZ7 mltD GO:0065007 PMID:1663890 IMP P membrane-bound lytic murein transglycosylase D mltD|yafG|dniR|b0211|ECK0211 protein taxon:83333 20151130 EcoCyc 18618 GO_AR:0000008 Warning Do not annotate to: GO:0001101 'response to acid chemical' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P37195 dctR GO:0001101 PMID:17259322 IMP P putative DNA-binding transcriptional regulator DctR dctR|yhiF|b3507|ECK3491 protein taxon:83333 20070214 EcoCyc 18757 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P76146 yneE GO:0006928 PMID:17122336 IMP P conserved inner membrane protein YneE yneE|b1520|ECK1513 protein taxon:83333 20070615 EcoCyc 18847 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P42628 yhaO GO:0006810 PMID:24225317 RCA P putative D/L-serine transporter yhaO|dlsT|cutP|b3110|ECK3100 protein taxon:83333 20160706 EcoCyc 19641 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB Q46840 yghO GO:0042710 PMID:14731270 IMP P putative DNA-binding transcriptional regulator YghO yghO|b2981|ECK2976 protein taxon:83333 20110725 EcoCyc 19698 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0AFS5 tqsA GO:0006810 PMID:16385049 IMP P autoinducer 2 exporter tqsA|ydgG|b1601|ECK1596 protein taxon:83333 20100912 EcoCyc 20110 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB Q47377 arnE GO:0006810 PMID:17928292 IMP P undecaprenyl-phosphate-alpha-L-Ara4N flippase - ArnE subunit arnE|yfbW|b4544|ECK2251 protein taxon:83333 20080801 EcoCyc 20850 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0AF45 yjbE GO:0042710 PMID:16385049 IMP P uncharacterized protein YjbE yjbE|b4026|ECK4018 protein taxon:83333 20061121 EcoCyc 21310 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate EcoGene EG11797 talA GO:0005622 PMID:21873635 IBA PANTHER:PTN002242159|UniProtKB:Q4WUP8|UniProtKB:Q5BGU0 C Transaldolase A UniProtKB:P0A867|PTN000074396 protein taxon:83333 20180308 GO_Central 22190 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate EcoGene EG10456 hmp GO:0005622 PMID:21873635 IBA PANTHER:PTN001116481|UniProtKB:Q5AX11 C Flavohemoprotein UniProtKB:P24232|PTN000531905 protein taxon:83333 20170228 GO_Central 22283 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate EcoGene EG13471 fsaA GO:0005622 PMID:21873635 IBA PANTHER:PTN002242159|UniProtKB:Q4WUP8|UniProtKB:Q5BGU0 C Fructose-6-phosphate aldolase 1 UniProtKB:P78055|PTN000841411 protein taxon:83333 20180308 GO_Central 22634 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate EcoGene EG11556 talB GO:0005622 PMID:21873635 IBA PANTHER:PTN002242159|UniProtKB:Q4WUP8|UniProtKB:Q5BGU0 C Transaldolase B UniProtKB:P0A870|PTN001642082 protein taxon:83333 20180308 GO_Central 22849 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate EcoGene EG11905 fsaB GO:0005622 PMID:21873635 IBA PANTHER:PTN002242159|UniProtKB:Q4WUP8|UniProtKB:Q5BGU0 C Fructose-6-phosphate aldolase 2 UniProtKB:P32669|PTN000074429 protein taxon:83333 20180308 GO_Central 23446 GO_AR:0000008 Warning Do not annotate to: GO:0040007 'growth' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate EcoGene EG10098 atpA GO:0040007 PMID:21873635 IBA PANTHER:PTN000389972|UniProtKB:P9WPU7 P ATP synthase subunit alpha UniProtKB:P0ABB0|PTN001032648 protein taxon:83333 20180504 GO_Central 23906 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate EcoGene EG12979 yggS GO:0005622 PMID:21873635 IBA PANTHER:PTN000015833|UniProtKB:O94903 C UPF0001 protein YggS UniProtKB:P67080|PTN000015910 protein taxon:83333 20170228 GO_Central 24382 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate EcoGene EG11759 yciK GO:0005622 PMID:21873635 IBA PANTHER:PTN002451405|UniProtKB:C8VUY4 C Uncharacterized oxidoreductase YciK UniProtKB:P31808|PTN001293040 protein taxon:83333 20170228 GO_Central 25326 GO_AR:0000008 Warning Do not annotate to: GO:0005622 'intracellular' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate EcoGene EG11322 ribE GO:0005622 PMID:21873635 IBA PANTHER:PTN000471873|UniProtKB:C8VFD4 C 6,7-dimethyl-8-ribityllumazine synthase UniProtKB:P61714|PTN001078167 protein taxon:83333 20170228 GO_Central #------------