GAF summary
Found 305 annotations in 313 lines.
GAF Validation Summary Errors are reported first.
For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 2 violations with type Warning.
GAF Prediction Summary
Found 11 predictions, see prediction file for details.
Used Ontology Summary
go/extensions/go-gaf
This report generated on 2018-10-01
With/From: IC annotations require a With/From GO ID
ASAP ABF-0016563 iaaH GO:0009405 PMID:17189441 IC P Indoleacetamide hydrolase gene taxon:198628 20080125 ASAP
ASAP ABF-0047129 togB GO:0009405 PMID:11555291 IC ASAP:ABF-0019625 P "Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component" gene taxon:198628 20080307 ASAP
ASAP ABF-0174089 togN GO:0009405 PMID:11555291 IC ASAP:ABF-0019625 P "oligogalacturonide ABC transporter, permease component" gene taxon:198628 20080307 ASAP
ASAP ABF-0174090 togA GO:0009405 PMID:11555291 IC ASAP:ABF-0019625 P "oligogalacturonide ABC transporter, ATPase component" gene taxon:198628 20080307 ASAP
Automatic repair of annotations to merged or obsoleted terms
ASAP ABF-0015085 ompR GO:0045941 PMID:17573480 IMP P DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015085 ompR GO:0016481 PMID:17573480 IMP P DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015085 ompR GO:0016563 PMID:17573480 IMP F DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015085 ompR GO:0016564 PMID:17573480 IMP F DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015577 hrpL GO:0032022 PMID:15629935 IMP P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080131 ASAP
ASAP ABF-0015577 hrpL GO:0045941 PMID:7592386 ISA ASAP:ACW-0293760 P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080225 ASAP
ASAP ABF-0015577 hrpL GO:0016563 PMID:7592386 ISA ASAP:ACW-0293760 F RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080225 ASAP
ASAP ABF-0016089 pecS GO:0030528 PMID:18790868 IMP F DNA-binding transcriptional regulatory protein PecS gene taxon:198628 20080130 ASAP
ASAP ABF-0016089 pecS GO:0045449 PMID:18790868 IMP P DNA-binding transcriptional regulatory protein PecS gene taxon:198628 20080130 ASAP
ASAP ABF-0016544 scrR GO:0016481 PMID:10986236 ISA ASAP:ACW-0289472 P "Fructose repressor FruR, LacI family" gene taxon:198628 20080117 ASAP
ASAP ABF-0016544 scrR GO:0016564 PMID:10986236 ISA ASAP:ACW-0289472 F "Fructose repressor FruR, LacI family" gene taxon:198628 20080117 ASAP
ASAP ABF-0018901 rhaS GO:0045941 PMID:14982630 IMP P "DNA-binding transcriptional activator, L-rhamnose-binding" JW3876|rhaC|ECK3898 gene taxon:198628 20080123 ASAP
ASAP ABF-0018901 rhaS GO:0016563 PMID:14982630 IMP F "DNA-binding transcriptional activator, L-rhamnose-binding" JW3876|rhaC|ECK3898 gene taxon:198628 20080123 ASAP
ASAP ABF-0019414 expR GO:0016564 PMID:16831870 IDA F DNA-binding transcriptional regulatory protein ExpR gene taxon:198628 20080208 ASAP
ASAP ABF-0019590 hrcJ GO:0032022 PMID:15629935 IMP P "Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)" gene taxon:198628 20080131 ASAP
ASAP ABF-0019593 hrpA GO:0032022 PMID:15629935 IMP P Hrp pili protein hrpA gene taxon:198628 20080131 ASAP
ASAP ABF-0019594 hrpS GO:0032022 PMID:15629935 IMP P HrpS type III protein secretion system regulatory protein gene taxon:198628 20080131 ASAP
ASAP ABF-0019594 hrpS GO:0045941 PMID:7592386 ISA ASAP:ACW-0293740 P HrpS type III protein secretion system regulatory protein gene taxon:198628 20080225 ASAP
ASAP ABF-0019594 hrpS GO:0016563 PMID:7592386 ISA ASAP:ACW-0293740 F HrpS type III protein secretion system regulatory protein gene taxon:198628 20080225 ASAP
ASAP ABF-0019598 hrpY GO:0032022 PMID:15629935 IMP P "DNA-binding response regulator, LuxR family, near polyamine transporter" gene taxon:198628 20080131 ASAP
ASAP ABF-0019600 hrpX GO:0032022 PMID:15629935 IMP P type III protein secretion system sensor kinase gene taxon:198628 20080131 ASAP
ASAP ABF-0020117 kdgR GO:0016481 PMID:1840643 IDA P DNA-binding transcriptional regulatory protein KdgR gene taxon:198628 20080115 ASAP
ASAP ABF-0020117 kdgR GO:0016564 PMID:1840643 IDA F DNA-binding transcriptional regulatory protein KdgR gene taxon:198628 20080115 ASAP