Table of contents
Summary
GAF Parser Summary
There are 10 GAF parser warnings.
GAF summary
Found 1150 annotations in 1159 lines.
GAF Validation Summary
Errors are reported first.
For rule GO_AR:0000007 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000007)
IPI should not be used with catalytic activity molecular function terms, there is one violation with type Warning.
For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008)
No annotations should be made to uninformative high level terms, there are 6 violations with type Warning.
GAF Prediction Summary
Found 87 predictions, see prediction file for details.
Used Ontology Summary
go/extensions/go-gaf
Report
SUMMARY
- Associations: 1150
- Lines in file (incl headers): 1169
- Lines skipped: 19
STATISTICS
- taxon_count: 0
- reference_count: 0
- subject_sample: []
- object_sample: []
- subject_count: 0
- taxon_sample: []
- object_count: 0
MESSAGES
- FATAL: 0
- ERROR: 5
- WARNING: 40
ERROR
- Violates GO Rule: obj:'GO:0042742' "GORULE:0000029: All IEAs over a year old are removed"
UniProtKB P29430 pedA GO:0042742 GO_REF:0000004 IEA SP_KW:KW-0044 P protein taxon:1254 20110217 GONUTS
- Invalid identifier: obj:'PMID:16166540[2]' "GORULE:0000027: contains non letter, non number character, or spaces"
UniProtKB P69411 rcsF GO:0035556 PMID:16166540[2] EXP P protein taxon:83333 20110313 GONUTS
- Violates GO Rule: obj:'GO:0008456' "GORULE:0000029: All IEAs over a year old are removed"
UniProtKB Q9QWR8 Naga GO:0008456 GO_REF:0000003 IEA EC:3.2.1.49 F protein taxon:10090 20110330 GONUTS
- Violates GO Rule: obj:'GO:0006979' "GORULE:0000029: All IEAs over a year old are removed"
UniProtKB P0ACS2 soxR GO:0006979 GO_REF:0000002 IEA InterPro:IPR010211 P protein taxon:83333 20110417 GONUTS
- Violates GO Rule: obj:'GO:0000272' "GORULE:0000029: All IEAs over a year old are removed"
UniProtKB Q08638 bglA GO:0000272 GO_REF:0000004 IEA SP_KW:KW-0624 P protein taxon:2336 20110417 GONUTS
WARNING
- Obsolete class: obj:'GO:0035413' "Violates GORULE:0000020, but was repaired"
UniProtKB P56704 WNT3A GO:0035413 PMID:20723538 IDA P protein taxon:9606 20101214 GONUTS
- Obsolete class: obj:'GO:0035083' "Violates GORULE:0000020, but was repaired"
UniProtKB Q1LV15 wdr69 GO:0035083 PMID:20568242 IMP P protein taxon:7955 20100924 GONUTS
- Obsolete class: obj:'GO:0005932' "Violates GORULE:0000020, but was repaired"
UniProtKB Q8TAM1 BBS10 GO:0005932 PMID:19190184 IDA C protein taxon:9606 20101130 GONUTS
- Obsolete class: obj:'GO:0042384' "Violates GORULE:0000020, but was repaired"
UniProtKB Q8TAM1 BBS10 GO:0042384 PMID:19190184 IMP P protein taxon:9606 20100926 GONUTS
- Obsolete class: obj:'GO:0005932' "Violates GORULE:0000020, but was repaired"
UniProtKB Q6ZW61 BBS12 GO:0005932 PMID:19190184 IDA C protein taxon:9606 20101130 GONUTS
- Obsolete class: obj:'GO:0042384' "Violates GORULE:0000020, but was repaired"
UniProtKB Q6ZW61 BBS12 GO:0042384 PMID:19190184 IMP P protein taxon:9606 20101010 GONUTS
- Obsolete class: obj:'GO:0043234' "Violates GORULE:0000020, but was repaired"
UniProtKB P07013 priB GO:0043234 PMID:8663104 IPI UniProtKB:P0AEF0|UniProtKB:P0A8J2|UniProtKB:P0ACB0|UniProtKB:P17888 C protein taxon:83333 20101107 GONUTS
- Obsolete class: obj:'GO:0006916' "Violates GORULE:0000020, but was repaired"
UniProtKB Q02858 Tek GO:0006916 PMID:16219799 IMP P protein taxon:10090 20101025 GONUTS
- Obsolete class: obj:'GO:0006916' "Violates GORULE:0000020, but was repaired"
UniProtKB O30916 sopB GO:0006916 PMID:15642738 IMP P protein taxon:90371 20110414 GONUTS
- Obsolete class: obj:'GO:0042787' "Violates GORULE:0000020, but was repaired"
UniProtKB P51965 UBE2E1 GO:0042787 PMID:18439907 IMP P protein taxon:9606 20101124 GONUTS
- Obsolete class: obj:'GO:0043234' "Violates GORULE:0000020, but was repaired"
UniProtKB P0A8J2 dnaT GO:0043234 PMID:8663104 IPI UniProtKB:P0AEF0|UniProtKB:P07013|UniProtKB:P0ACB0|UniProtKB:P17888 C protein taxon:83333 20101105 GONUTS
- Obsolete class: obj:'GO:0043234' "Violates GORULE:0000020, but was repaired"
UniProtKB P17888 priA GO:0043234 PMID:8663104 IPI UniProtKB:P0AEF0|UniProtKB:P07013|UniProtKB:P0A8J2|UniProtKB:P0ACB0 C protein taxon:83333 20101105 GONUTS
- Obsolete class: obj:'GO:0032863' "Violates GORULE:0000020, but was repaired"
UniProtKB Q99LJ8 Nus1 GO:0032863 PMID:19805174 IMP P protein taxon:10090 20101107 GONUTS
- Obsolete class: obj:'GO:0006916' "Violates GORULE:0000020, but was repaired"
UniProtKB Q3TCH7 Cul4a GO:0006916 PMID:18339895 IMP P protein taxon:10090 20101107 GONUTS
- Obsolete class: obj:'GO:0043234' "Violates GORULE:0000020, but was repaired"
UniProtKB P0ACB0 dnaB GO:0043234 PMID:8663104 IPI UniProtKB:P0AEF0|UniProtKB:P07013|UniProtKB:P0A8J2|UniProtKB:P17888 C protein taxon:83333 20101107 GONUTS
- Obsolete class: obj:'GO:0043234' "Violates GORULE:0000020, but was repaired"
UniProtKB P0AEF0 dnaC GO:0043234 PMID:8663104 IPI UniProtKB:P0ACB0|UniProtKB:P07013|UniProtKB:P0A8J2|UniProtKB:P17888 C protein taxon:83333 20101107 GONUTS
- Obsolete class with no replacement: obj:'GO:0003706' "Violates GORULE:0000020"
UniProtKB P55055 NR1H2 GO:0003706 PMID:11090131 IDA F protein taxon:9606 20110115 GONUTS
- Obsolete class with no replacement: obj:'GO:0035121' "Violates GORULE:0000020"
UniProtKB P22607 FGFR3 GO:0035121 PMID:20582225 IMP P protein taxon:9606 20101212 GONUTS
- Obsolete class with no replacement: obj:'GO:0003706' "Violates GORULE:0000020"
UniProtKB Q13133 NR1H3 GO:0003706 PMID:11090131 IDA F protein taxon:9606 20110115 GONUTS
- Obsolete class: obj:'GO:0043088' "Violates GORULE:0000020, but was repaired"
UniProtKB O14907 TAX1BP3 GO:0043088 PMID:21139582 IDA P protein taxon:9606 20101215 GONUTS
- Obsolete class: obj:'GO:0035413' "Violates GORULE:0000020, but was repaired"
UniProtKB P97299 Sfrp2 GO:0035413 PMID:20723538 IDA P protein taxon:10090 20101214 GONUTS
- Obsolete class: obj:'GO:0043088' "Violates GORULE:0000020, but was repaired"
UniProtKB P03126 E6 GO:0043088 PMID:21139582 IDA P protein taxon:333760 20101215 GONUTS
- Obsolete class: obj:'GO:0001105' "Violates GORULE:0000020, but was repaired"
UniProtKB P70662 Ldb1 GO:0001105 PMID:20570862 IMP F protein taxon:10090 20101215 GONUTS
- Obsolete class with no replacement: obj:'GO:0019861' "Violates GORULE:0000020"
UniProtKB P46869 FLA10 GO:0019861 PMID:16527740 IDA C protein taxon:3055 20110114 GONUTS
- Obsolete class with no replacement: obj:'GO:0019861' "Violates GORULE:0000020"
UniProtKB Q9SMH5 DHC1B GO:0019861 PMID:16527740 IDA C protein taxon:3055 20110114 GONUTS
- Obsolete class with no replacement: obj:'GO:0019861' "Violates GORULE:0000020"
UniProtKB Q7XA07 D1BLIC GO:0019861 PMID:16527740 IDA C protein taxon:3055 20110119 GONUTS
- Obsolete class with no replacement: obj:'GO:0008634' "Violates GORULE:0000020"
UniProtKB O95238 SPDEF GO:0008634 PMID:21229552 IDA P protein taxon:9606 20110116 GONUTS
- Obsolete class: obj:'GO:0090004' "Violates GORULE:0000020, but was repaired"
UniProtKB P0C605 Prkg1 GO:0090004 PMID:19127022 IDA P protein taxon:10090 20110120 GONUTS
- Obsolete class: obj:'GO:0042511' "Violates GORULE:0000020, but was repaired"
UniProtKB P17777 Lif GO:0042511 PMID:20624457 IDA P protein taxon:10116 20110116 GONUTS
- Obsolete class: obj:'GO:0042517' "Violates GORULE:0000020, but was repaired"
UniProtKB P17777 Lif GO:0042517 PMID:20624457 IDA P protein taxon:10116 20110116 GONUTS
- Obsolete class: obj:'GO:0042511' "Violates GORULE:0000020, but was repaired"
UniProtKB P01581 Ifng GO:0042511 PMID:20624457 IDA P protein taxon:10116 20110116 GONUTS
- Obsolete class: obj:'GO:0032403' "Violates GORULE:0000020, but was repaired"
UniProtKB Q6IMN6 CAPRIN2 GO:0032403 PMID:18762581 IPI UniProtKB:O75197|UniProtKB:O15169 F protein taxon:9606 20110121 GONUTS
- Obsolete class: obj:'GO:0070215' "Violates GORULE:0000020, but was repaired"
UniProtKB P02340 Tp53 GO:0070215 PMID:20818388 IPI UniProtKB:P23804 F protein taxon:10090 20110121 GONUTS
- Obsolete class with no replacement: obj:'GO:2000154' "Violates GORULE:0000020"
UniProtKB P0A6X7 ihfA NOT GO:2000154 PMID:12686630 IMP P protein taxon:83333 20110415 GONUTS
- Obsolete class: obj:'GO:0006916' "Violates GORULE:0000020, but was repaired"
UniProtKB Q96JZ2 HSH2D GO:0006916 PMID:15569688 IDA P protein taxon:9606 20110402 GONUTS
- Obsolete class: obj:'GO:0031513' "Violates GORULE:0000020, but was repaired"
UniProtKB Q9HBA0 TRPV4 GO:0031513 PMID:18024594 IDA C protein taxon:9606 20110601 GONUTS
- Obsolete class: obj:'GO:0032862' "Violates GORULE:0000020, but was repaired"
UniProtKB O52623 sopE GO:0032862 PMID:9630225 IDA P protein taxon:90371 20110411 GONUTS
- Obsolete class with no replacement: obj:'GO:0006184' "Violates GORULE:0000020"
UniProtKB Q53770 tetM GO:0006184 PMID:7826010 EXP P protein taxon:1280 20110416 GONUTS
- Obsolete class: obj:'GO:0030529' "Violates GORULE:0000020, but was repaired"
UniProtKB Q9M5P4 CRS2 GO:0030529 PMID:11179231 IDA C protein taxon:4577 20110416 GONUTS
- Obsolete class with no replacement: obj:'GO:0045885' "Violates GORULE:0000020"
UniProtKB P49450 CENPA GO:0045885 PMID:21423629 IMP P protein taxon:9606 20110417 GONUTS
OWLTools check
#Line number RuleID ViolationType Message Line
#------------
# GAF Parser ERROR count: 0
#------------
# GAF Parser WARNING count: 10
16 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB Q08698 nrdE Contributes_to GO:0004748 PMID:7809142 IDA F protein taxon:90371 20100519 GONUTS
501 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P68871 HBB Contributes_to GO:0031720 PMID:19740759 IDA F protein taxon:9606 20101214 GONUTS
503 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P68871 HBB Contributes_to GO:0004601 PMID:19740759 IDA F protein taxon:9606 20101214 GONUTS
522 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P69905 HBA2 Contributes_to GO:0031720 PMID:19740759 IDA F protein taxon:9606 20101214 GONUTS
524 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P69905 HBA2 Contributes_to GO:0004601 PMID:19740759 IDA F protein taxon:9606 20101214 GONUTS
543 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P00738 HP Contributes_to GO:0004601 PMID:19740759 IDA F protein taxon:9606 20101214 GONUTS
837 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P14565 traI Contributes_to GO:0004520 PMID:7499339 IDA F protein taxon:83333 20110517 GONUTS
1004 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P76014 dhaL Contributes_to GO:0016740 PMID:11350937 IDA F protein taxon:83333 20110524 GONUTS
1007 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P37349 dhaM Contributes_to GO:0016740 PMID:11350937 IDA F protein taxon:83333 20110524 GONUTS
1008 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P76015 dhaK Contributes_to GO:0016740 PMID:11350937 IDA F protein taxon:83333 20110524 GONUTS
#------------
#------------
# Validation for #1150 annotations in 1159 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000007 IPI should not be used with catalytic activity molecular function terms Warning count: 1
532 GO_AR:0000007 Warning IPI should not be used with catalytic activity molecular function terms UniProtKB Q9DBH0 Wwp2 GO:0004842 PMID:15047715 IPI UniProtKB:P20263 F protein taxon:10090 20101213 GONUTS
#------------
# GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 6
194 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0A261 tsx GO:0006810 PMID:9043137 IMP P protein taxon:90371 20110414 GONUTS
257 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB Q38845 PP2AA1 GO:0006950 PMID:18162590 IMP P protein taxon:3702 20101021 GONUTS
365 GO_AR:0000008 Warning Do not annotate to: GO:0040007 'growth' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P36581 cal1 NOT GO:0040007 PMID:19351719 IMP P protein taxon:284812 20101123 GONUTS
893 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate UniProtKB P0A6A3 ackA GO:0042710 PMID:12753190 IMP P protein taxon:83333 20110923 GONUTS
988 GO_AR:0000008 Warning Do not annotate to: GO:0001101 'response to acid chemical' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P0ACA3 sspA GO:0001101 PMID:15819627 IMP P protein taxon:83333 20110412 GONUTS
994 GO_AR:0000008 Warning Do not annotate to: GO:0008152 'metabolic process' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate UniProtKB P76085 paaK GO:0008152 PMID:9748275 IMP P protein taxon:83333 20110412 GONUTS
#------------
Predictions
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004340 glucokinase activity IDA
GO:0051156 glucose 6-phosphate metabolic process AnnotationPropagation P GO:0004340 glucokinase activity IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0016301 kinase activity IDA
GO:0097339 glycolate transmembrane transport AnnotationPropagation P GO:0043879 glycolate transmembrane transporter activity IGI
GO:0005623 cell AnnotationPropagation C GO:0035356 cellular triglyceride homeostasis IMP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016491 oxidoreductase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004497 monooxygenase activity EXP
GO:0015768 maltose transport AnnotationPropagation P GO:0005363 maltose transmembrane transporter activity IMP
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0005363 maltose transmembrane transporter activity IMP
GO:0005622 intracellular AnnotationPropagation C GO:0042073 intraciliary transport IDA
GO:0005623 cell AnnotationPropagation C GO:0042073 intraciliary transport IDA
GO:0005929 cilium AnnotationPropagation C GO:0042073 intraciliary transport IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0016301 kinase activity ISM
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity IDA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IDA
GO:0005622 intracellular AnnotationPropagation C GO:0045022 early endosome to late endosome transport IMP
GO:0005623 cell AnnotationPropagation C GO:0045022 early endosome to late endosome transport IMP
GO:0005829 cytosol AnnotationPropagation C GO:0045022 early endosome to late endosome transport IMP
GO:0006470 protein dephosphorylation AnnotationPropagation P GO:0008138 protein tyrosine/serine/threonine phosphatase activity IDA
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity IMP
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IMP
GO:0015904 tetracycline transport AnnotationPropagation P GO:0008493 tetracycline transmembrane transporter activity ISS
GO:0006855 drug transmembrane transport AnnotationPropagation P GO:0008493 tetracycline transmembrane transporter activity ISS
GO:0098656 anion transmembrane transport AnnotationPropagation P GO:0008493 tetracycline transmembrane transporter activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0009055 electron transfer activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008888 glycerol dehydrogenase [NAD+] activity IDA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0003872 6-phosphofructokinase activity IMP
GO:0061615 glycolytic process through fructose-6-phosphate AnnotationPropagation P GO:0003872 6-phosphofructokinase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008942 nitrite reductase [NAD(P)H] activity IMP
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0005623 cell AnnotationPropagation C GO:0035356 cellular triglyceride homeostasis IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008942 nitrite reductase [NAD(P)H] activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IMP
GO:0006479 protein methylation AnnotationPropagation P GO:0008276 protein methyltransferase activity IMP
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0003678 DNA helicase activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity ISS
GO:0005622 intracellular AnnotationPropagation C GO:0035556 intracellular signal transduction IEP
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016491 oxidoreductase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004450 isocitrate dehydrogenase (NADP+) activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004709 MAP kinase kinase kinase activity IDA
GO:0000186 activation of MAPKK activity AnnotationPropagation P GO:0004709 MAP kinase kinase kinase activity IDA
GO:0097339 glycolate transmembrane transport AnnotationPropagation P GO:0043879 glycolate transmembrane transporter activity IGI
GO:1901998 toxin transport AnnotationPropagation P GO:0019534 toxin transmembrane transporter activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0019534 toxin transmembrane transporter activity IMP
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IMP
GO:1903506 regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0003712 transcription coregulator activity IMP
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004340 glucokinase activity IMP
GO:0051156 glucose 6-phosphate metabolic process AnnotationPropagation P GO:0004340 glucokinase activity IMP
GO:0006508 proteolysis AnnotationPropagation P GO:0004175 endopeptidase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004096 catalase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0016301 kinase activity IDA
GO:0098793 presynapse AnnotationPropagation C GO:0051583 dopamine uptake involved in synaptic transmission IMP
GO:0005623 cell AnnotationPropagation C GO:0051583 dopamine uptake involved in synaptic transmission IMP
GO:0006508 proteolysis AnnotationPropagation P GO:0008235 metalloexopeptidase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008137 NADH dehydrogenase (ubiquinone) activity ISS
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0016209 antioxidant activity IMP
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0004673 protein histidine kinase activity IDA
GO:0001172 transcription, RNA-templated AnnotationPropagation P GO:0003968 RNA-directed 5'-3' RNA polymerase activity IGI
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004520 endodeoxyribonuclease activity IDA
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004520 endodeoxyribonuclease activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004345 glucose-6-phosphate dehydrogenase activity IMP
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016491 oxidoreductase activity IMP
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0004673 protein histidine kinase activity IMP
GO:0018108 peptidyl-tyrosine phosphorylation AnnotationPropagation P GO:0005006 epidermal growth factor-activated receptor activity IMP
GO:0007173 epidermal growth factor receptor signaling pathway AnnotationPropagation P GO:0005006 epidermal growth factor-activated receptor activity IMP
GO:0016310 phosphorylation AnnotationPropagation P GO:0004797 thymidine kinase activity IMP
GO:0009165 nucleotide biosynthetic process AnnotationPropagation P GO:0004797 thymidine kinase activity IMP
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process AnnotationPropagation P GO:0004797 thymidine kinase activity IMP
GO:0005622 intracellular AnnotationPropagation C GO:0000160 phosphorelay signal transduction system IDA
GO:0005622 intracellular AnnotationPropagation C GO:0000160 phosphorelay signal transduction system ISA
GO:0032259 methylation AnnotationPropagation P GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008940 nitrate reductase activity IGI
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008940 nitrate reductase activity IMP
GO:0032259 methylation AnnotationPropagation P GO:0004851 uroporphyrin-III C-methyltransferase activity ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0009029 tetraacyldisaccharide 4'-kinase activity IMP
GO:0005622 intracellular AnnotationPropagation C GO:0000160 phosphorelay signal transduction system IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008863 formate dehydrogenase (NAD+) activity IGI
GO:0016310 phosphorylation AnnotationPropagation P GO:0004618 phosphoglycerate kinase activity IMP
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISA
Predictions (experimental)