*GAF Parser Summary*

There are 1459 GAF parser warnings.

*GAF summary*

Found 221197 annotations in 221213 lines.

*GAF Validation Summary*
Errors are reported first.

For rule GO_AR:0000001 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000001)
 Basic GAF checks, there are 2419 violations with type Error.

For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014)
 Valid GO term ID, there are 22 violations with type Error.

For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003)
 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there are 107 violations with type Warning.

For rule GO_AR:0000007 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000007)
 IPI should not be used with catalytic activity molecular function terms, there are 3 violations with type Warning.

For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014)
 Valid GO term ID, there are 9 violations with type Warning.

For rule GO_AR:0000016 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000016)
 IC annotations require a With/From GO ID, there are 4 violations with type Warning.

For rule GO_AR:0000018 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000018)
 IPI annotations require a With/From entry, there are 6 violations with type Warning.


*GAF Prediction Summary*

Found 2850 predictions, see prediction file for details.

*Used Ontology Summary*

	go/extensions/go-gaf