#Line number RuleID ViolationType Message Line #------------ #------------ # Validation for #1458 annotations in 1463 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000014 Valid GO term ID Error count: 2 100 GO_AR:0000014 Error The id 'GO:0000988' in the annotation is an obsolete class SGN 8326 HSFA2 GO:0000988 PMID:19491106 IDA F heat stress transcription factor A2 gene taxon:4081 20120224 SGN 1453 GO_AR:0000014 Error The id 'GO:0042965' in the annotation is an obsolete class SGN 43099 SlGRX1 GO:0042965 PMID:20862491 IDA P glutaredoxin gene gene taxon:4081 20101210 SGN #------------ # GO_AR:0000007 IPI should not be used with catalytic activity molecular function terms Warning count: 1 80 GO_AR:0000007 Warning IPI should not be used with catalytic activity molecular function terms SGN 5257 pmt GO:0030750 PMID:17221359 IPI NCBI_gi:86438859 F putrescine N-methyltransferase Solyc06g053510 gene taxon:4081 20090625 SGN #------------ # GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 23 8 GO_AR:0000008 Warning Do not annotate to: GO:0044428 'nuclear part' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate SGN 364 c14 GO:0044428 PMID:11444695 IDA C cysteine protease CYP1 C14|tdi-65|Solyc12g088670 gene taxon:4081 20090612 SGN 9 GO_AR:0000008 Warning Do not annotate to: GO:0044434 'chloroplast part' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate SGN 364 c14 GO:0044434 PMID:11444695 IDA C cysteine protease CYP1 C14|tdi-65|Solyc12g088670 gene taxon:4081 20090612 SGN 16 GO_AR:0000008 Warning Do not annotate to: GO:0044459 'plasma membrane part' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate SGN 1027 LeST1-1 GO:0044459 PMID:12937983 IDA C sulfate transporter 1 THT1-3|THT7-1|THT1-4|Solyc10g047170 gene taxon:4081 20090929 SGN 27 GO_AR:0000008 Warning Do not annotate to: GO:0044459 'plasma membrane part' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate SGN 5291 amt1 GO:0044459 PMID:8755617 IDA C AMT1 Solyc09g090730 gene taxon:4081 20090929 SGN 28 GO_AR:0000008 Warning Do not annotate to: GO:0044459 'plasma membrane part' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate SGN 5389 LeST1-2 GO:0044459 PMID:12937983 IDA C sulfate transporter 2 AF347614|Solyc12g056930 gene taxon:4081 20090929 SGN 39 GO_AR:0000008 Warning Do not annotate to: GO:0044434 'chloroplast part' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate SGN 17699 SlBCAT4 GO:0044434 PMID:20435740 IDA C SlBCAT4 Solyc03g043880 gene taxon:4081 20120131 SGN 41 GO_AR:0000008 Warning Do not annotate to: GO:0044429 'mitochondrial part' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate SGN 110964 SlBCAT2 GO:0044429 PMID:20435740 IDA C SlBCAT2 Solyc07g021630 gene taxon:4081 20120130 SGN 100 GO_AR:0000008 Warning Do not annotate to: GO:0000988 'obsolete transcription factor activity, protein binding' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 8326 HSFA2 GO:0000988 PMID:19491106 IDA F heat stress transcription factor A2 gene taxon:4081 20120224 SGN 297 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 68 SlIAA3 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA3 LeIAA3|IAA3|Solyc09g065850 gene taxon:4081 20141120 SGN 329 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 463 e GO:0006950 PMID:22314799 IEP P entire b|SlIAA9|iaa9|LeIAA4|IAA4|ctd1|Solyc04g076850|SlIAA4 gene taxon:4081 20141120 SGN 434 GO_AR:0000008 Warning Do not annotate to: GO:0009628 'response to abiotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 4506 Asr2 GO:0009628 PMID:17602312 IEP P Abscicic acid stress ripening 2 Solyc04g071580 gene taxon:4081 20080215 SGN 543 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 9403 SlMAPKKK1 GO:0006950 PMID:25036993 IDA P MAP kinase kinase kinase 1 Solyc01g005030|MAPKKK1 gene taxon:4081 20141103 SGN 862 GO_AR:0000008 Warning Do not annotate to: GO:0009628 'response to abiotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 20062 iaa14 GO:0009628 PMID:22314799 IDA P auxin-regulated IAA14 Solyc03g121060|SlIAA14 gene taxon:4081 20141121 SGN 901 GO_AR:0000008 Warning Do not annotate to: GO:0009628 'response to abiotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 22083 Asr_2 GO:0009628 PMID:17602312 IEP P Abscicic acid stress ripening 2 Solyc04g071580|Asr2 gene taxon:4081 20120509 SGN 1004 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 26635 SlC3H43 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 43 Solyc06g054620|C3H43 gene taxon:4081 20150304 SGN 1047 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 27917 SlC3H48 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 48 24870401|C3H48|Solyc06g082010 gene taxon:4081 20150304 SGN 1068 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 28803 SlIAA20 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA20 SlIAA20|iaa20|Solyc07g019450 gene taxon:4081 20141121 SGN 1112 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 29921 SlC3H50 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 50 Solyc07g053750|C3H50 gene taxon:4081 20150304 SGN 1226 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 35249 SlIAA1 GO:0006950 PMID:22314799 IDA P auxin-regulated IAA1 IAA1|Solyc09g083280 gene taxon:4081 20141124 SGN 1378 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 40630 SlMAPKKK83 GO:0006950 PMID:25036993 IEP P MAP kinase kinase kinase 83 MAPKKK83|Solyc12g005360 gene taxon:4081 20141111 SGN 1391 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 40851 SlC3H73 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 73 Solyc12g008660|C3H73 gene taxon:4081 20150304 SGN 1401 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 40914 SlMAPKKK84 GO:0006950 PMID:25036993 IEP P MAP kinase kinase kinase 84 MAPKKK84|Solyc12g009340 gene taxon:4081 20141111 SGN 1439 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate SGN 42691 SlC3H80 GO:0006950 PMID:24870401 ISS P Zinc finger transcription factor 80 C3H80|Solyc12g089260 gene taxon:4081 20150304 SGN #------------ # GO_AR:0000014 Valid GO term ID Warning count: 2 52 GO_AR:0000014 Warning The id 'GO:0004872' in the annotation is an alternate id for: GO:0038023 SGN 662 Gr GO:0004872 PMID:15834010 IMP F green ripe gr|DQ372895|Solyc01g104340 gene taxon:4081 20071005 SGN 66 GO_AR:0000014 Warning The id 'GO:0004872' in the annotation is an alternate id for: GO:0038023 SGN 1046 Nr2 GO:0004872 PMID:15834010 IMP F Never ripe-2 Nr-2|Never-ripe|Solyc09g075440 gene taxon:4081 20071005 SGN #------------ # GO_AR:0000016 IC annotations require a With/From GO ID Warning count: 1 493 GO_AR:0000016 Warning IC annotations require a With/From GO ID SGN 5583 tg1 GO:0016120 SGN_ref:861 IC P test gene tg2|tg gene taxon:4081 20121115 SGN #------------