#Line number RuleID ViolationType Message Line #------------ # GAF Parser ERROR count: 0 #------------ # GAF Parser WARNING count: 32 381 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10134 carA CONTRIBUTES_TO GO:0004088 PMID:21873635 IBA EcoGene:EG10134|PANTHER:PTN000150382|SGD:S000005829|UniProtKB:Q9LVW7 F Carbamoyl-phosphate synthase small chain UniProtKB:P0A6F1|PTN000892052 protein taxon:83333 20170228 GO_Central 497 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10682 pabA CONTRIBUTES_TO GO:0004049 PMID:21873635 IBA EcoGene:EG11027|PANTHER:PTN000230074|PomBase:SPBC1539.09c|SGD:S000001694|TAIR:locus:2174378|UniProtKB:P09786|UniProtKB:P20576|UniProtKB:P28819|UniProtKB:Q42565|UniProtKB:Q764B9|UniProtKB:Q7XUS2 F Aminodeoxychorismate synthase component 2 UniProtKB:P00903|PTN000230121 protein taxon:83333 20170228 GO_Central 609 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG12087 nuoG CONTRIBUTES_TO GO:0008137 PMID:21873635 IBA PANTHER:PTN000177461|UniProtKB:P28331 F NADH-quinone oxidoreductase subunit G UniProtKB:P33602|PTN000906907 protein taxon:83333 20180323 GO_Central 745 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10104 atpG CONTRIBUTES_TO GO:0046961 PMID:21873635 IBA EcoGene:EG10104|PANTHER:PTN000190379|SGD:S000000243 F ATP synthase gamma chain UniProtKB:P0ABA6|PTN000190474 protein taxon:83333 20180509 GO_Central 788 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10098 atpA CONTRIBUTES_TO GO:0016887 PMID:21873635 IBA PANTHER:PTN000389891|RGD:619993|SGD:S000000195|UniProtKB:P25705 F ATP synthase subunit alpha UniProtKB:P0ABB0|PTN001032648 protein taxon:83333 20180504 GO_Central 1028 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10686 parC CONTRIBUTES_TO GO:0003918 PMID:21873635 IBA EcoGene:EG10423|EcoGene:EG10686|PANTHER:PTN001607041|UniProtKB:O67108|UniProtKB:P9WG47|UniProtKB:Q9HUK1 F DNA topoisomerase 4 subunit A UniProtKB:P0AFI2|PTN000018881 protein taxon:83333 20170421 GO_Central 1066 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10100 atpC CONTRIBUTES_TO GO:0046933 PMID:21873635 IBA EcoGene:EG10100|PANTHER:PTN000352454|SGD:S000002162 F ATP synthase epsilon chain UniProtKB:P0A6E6|PTN000352535 protein taxon:83333 20170228 GO_Central 1361 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10996 tgt CONTRIBUTES_TO GO:0008479 PMID:21873635 IBA EcoGene:EG10996|PANTHER:PTN000239043 F Queuine tRNA-ribosyltransferase UniProtKB:P0A847|PTN001845341 protein taxon:83333 20170228 GO_Central 1468 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10103 atpF CONTRIBUTES_TO GO:0046961 PMID:21873635 IBA EcoGene:EG10103|PANTHER:PTN002124753 F ATP synthase subunit b UniProtKB:P0ABA0|PTN002124823 protein taxon:83333 20180110 GO_Central 1742 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10536 livF CONTRIBUTES_TO GO:0015658 PMID:21873635 IBA EcoGene:EG10536|PANTHER:PTN000657089 F High-affinity branched-chain amino acid transport ATP-binding protein LivF UniProtKB:P22731|PTN000657143 protein taxon:83333 20170421 GO_Central 1782 WARNING Repairing qualifier 'colocalizes_with' from: COLOCALIZES_WITH EcoGene EG13141 dinB COLOCALIZES_WITH GO:0090734 PMID:21873635 IBA PANTHER:PTN000117876|UniProtKB:Q9UBT6 C DNA polymerase IV UniProtKB:Q47155|PTN000118193 protein taxon:83333 20180216 GO_Central 2061 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10894 rpoB CONTRIBUTES_TO GO:0003899 PMID:21873635 IBA PANTHER:PTN000465875|PomBase:SPAC23G3.01|RGD:620822 F DNA-directed RNA polymerase subunit beta UniProtKB:P0A8V2|PTN000466111 protein taxon:83333 20170228 GO_Central 2192 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG12089 nuoI CONTRIBUTES_TO GO:0003954 PMID:21873635 IBA EcoGene:EG12089|PANTHER:PTN000091255|UniProtKB:O00217 F NADH-quinone oxidoreductase subunit I UniProtKB:P0AFD6|PTN000091341 protein taxon:83333 20180308 GO_Central 2415 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10179 cyoB CONTRIBUTES_TO GO:0004129 PMID:21873635 IBA FB:FBgn0013674|MGI:MGI:102504|PANTHER:PTN000046094|SGD:S000007260|UniProtKB:P00395|UniProtKB:Q9I3G0|UniProtKB:Q9I3G3 F Cytochrome bo(3) ubiquinol oxidase subunit 1 UniProtKB:P0ABI8|PTN000823960 protein taxon:83333 20170228 GO_Central 2528 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG11027 trpGD CONTRIBUTES_TO GO:0004049 PMID:21873635 IBA EcoGene:EG11027|PANTHER:PTN000230074|PomBase:SPBC1539.09c|SGD:S000001694|TAIR:locus:2174378|UniProtKB:P09786|UniProtKB:P20576|UniProtKB:P28819|UniProtKB:Q42565|UniProtKB:Q764B9|UniProtKB:Q7XUS2 F Bifunctional protein TrpGD UniProtKB:P00904|PTN001376727 protein taxon:83333 20170228 GO_Central 2819 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG11773 nuoM CONTRIBUTES_TO GO:0003954 PMID:21873635 IBA EcoGene:EG11773|PANTHER:PTN000511780 F NADH-quinone oxidoreductase subunit M UniProtKB:P0AFE8|PTN000511850 protein taxon:83333 20170428 GO_Central 2968 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG14216 hyfH CONTRIBUTES_TO GO:0003954 PMID:21873635 IBA EcoGene:EG12089|PANTHER:PTN000091255|UniProtKB:O00217 F Hydrogenase-4 component H UniProtKB:P77423|PTN000091346 protein taxon:83333 20180308 GO_Central 3016 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10710 pheT CONTRIBUTES_TO GO:0004826 PMID:21873635 IBA FB:FBgn0039175|PANTHER:PTN000101805|SGD:S000004050|UniProtKB:Q9NSD9 F Phenylalanine--tRNA ligase beta subunit UniProtKB:P07395|PTN000101931 protein taxon:83333 20170228 GO_Central 3039 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG12087 nuoG CONTRIBUTES_TO GO:0003954 PMID:21873635 IBA EcoGene:EG12087|PANTHER:PTN000177461 F NADH-quinone oxidoreductase subunit G UniProtKB:P33602|PTN000906907 protein taxon:83333 20180323 GO_Central 3169 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10180 cyoC CONTRIBUTES_TO GO:0004129 PMID:21873635 IBA PANTHER:PTN000149995|PomBase:SPMIT.04|SGD:S000007283 F Cytochrome bo(3) ubiquinol oxidase subunit 3 UniProtKB:P0ABJ3|PTN000891824 protein taxon:83333 20170602 GO_Central 3236 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10954 sodB CONTRIBUTES_TO GO:0004784 PMID:21873635 IBA EcoGene:EG10954|PANTHER:PTN000150157|TAIR:locus:2166953|TAIR:locus:2176167|UniProtKB:P21276|UniProtKB:Q5VSB7 F Superoxide dismutase [Fe] UniProtKB:P0AGD3|PTN001349187 protein taxon:83333 20170421 GO_Central 3410 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG12088 nuoH CONTRIBUTES_TO GO:0003954 PMID:21873635 IBA EcoGene:EG12088|PANTHER:PTN000153359 F NADH-quinone oxidoreductase subunit H UniProtKB:P0AFD4|PTN000893184 protein taxon:83333 20170228 GO_Central 3478 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10479 hycF CONTRIBUTES_TO GO:0003954 PMID:21873635 IBA EcoGene:EG12089|PANTHER:PTN000091255|UniProtKB:O00217 F Formate hydrogenlyase subunit 6 UniProtKB:P16432|PTN000852034 protein taxon:83333 20180308 GO_Central 3536 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10625 mutS CONTRIBUTES_TO GO:0032143 PMID:21873635 IBA PANTHER:PTN002260779|UniProtKB:P43246|UniProtKB:P52701 F DNA mismatch repair protein MutS UniProtKB:P23909|PTN000145849 protein taxon:83333 20180524 GO_Central 3643 WARNING Repairing qualifier 'colocalizes_with' from: COLOCALIZES_WITH EcoGene EG11128 yciH COLOCALIZES_WITH GO:0005840 PMID:21873635 IBA PANTHER:PTN000300443|SGD:S000003775 C Uncharacterized protein YciH UniProtKB:P08245|PTN001400375 protein taxon:83333 20170228 GO_Central 4113 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10423 gyrA CONTRIBUTES_TO GO:0003918 PMID:21873635 IBA EcoGene:EG10423|EcoGene:EG10686|PANTHER:PTN001607041|UniProtKB:O67108|UniProtKB:P9WG47|UniProtKB:Q9HUK1 F DNA gyrase subunit A UniProtKB:P0AES4|PTN000018884 protein taxon:83333 20170421 GO_Central 4209 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG12523 nrdG CONTRIBUTES_TO GO:0004748 PMID:21873635 IBA EcoGene:EG12523|PANTHER:PTN001576428 F Anaerobic ribonucleoside-triphosphate reductase-activating protein UniProtKB:P0A9N8|PTN001576432 protein taxon:83333 20170228 GO_Central 4220 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG11025 trpB CONTRIBUTES_TO GO:0004834 PMID:21873635 IBA EcoGene:EG11025|PANTHER:PTN000034394|SGD:S000002994|TAIR:locus:2005543|TAIR:locus:2160190|UniProtKB:P9WFX9|UniProtKB:Q5AZP9 F Tryptophan synthase beta chain UniProtKB:P0A879|PTN000816647 protein taxon:83333 20170228 GO_Central 4324 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10178 cyoA CONTRIBUTES_TO GO:0004129 PMID:21873635 IBA PANTHER:PTN000527128|PomBase:SPMIT.11|SGD:S000007281|UniProtKB:P00403 F Cytochrome bo(3) ubiquinol oxidase subunit 2 UniProtKB:P0ABJ1|PTN000527184 protein taxon:83333 20170228 GO_Central 4419 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10895 rpoC CONTRIBUTES_TO GO:0003899 PMID:21873635 IBA FB:FBgn0003277|PANTHER:PTN000453461|RGD:620824 F DNA-directed RNA polymerase subunit beta' UniProtKB:P0A8T7|PTN001065896 protein taxon:83333 20170228 GO_Central 4428 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG12083 nuoB CONTRIBUTES_TO GO:0003954 PMID:21873635 IBA EcoGene:EG12083|PANTHER:PTN000242188|UniProtKB:O75251 F NADH-quinone oxidoreductase subunit B UniProtKB:P0AFC7|PTN000242265 protein taxon:83333 20170616 GO_Central 4553 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO EcoGene EG10625 mutS CONTRIBUTES_TO GO:0032137 PMID:21873635 IBA MGI:MGI:101816|MGI:MGI:1343961|PANTHER:PTN002260779|SGD:S000001162|SGD:S000002504|SGD:S000005450|UniProtKB:P20585|UniProtKB:P43246|UniProtKB:P52701 F DNA mismatch repair protein MutS UniProtKB:P23909|PTN000145849 protein taxon:83333 20180524 GO_Central #------------ #------------ # Validation for #4788 annotations in 4796 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 10 212 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG13721 yccS GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Inner membrane protein YccS UniProtKB:P75870|PTN001577038 protein taxon:83333 20170420 GO_Central 1432 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG11891 yeeA GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Inner membrane protein YeeA UniProtKB:P33011|PTN002021269 protein taxon:83333 20170420 GO_Central 1507 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG11953 mdtO GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Multidrug resistance protein MdtO UniProtKB:P32715|PTN001293374 protein taxon:83333 20170420 GO_Central 2071 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG12906 yhfK GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Uncharacterized protein YhfK UniProtKB:P45537|PTN001577037 protein taxon:83333 20170420 GO_Central 2373 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG13141 dinB GO:0005515 PMID:21873635 IBA EcoGene:EG13141|MGI:MGI:1349767|PANTHER:PTN000117876|PomBase:SPCC553.07c F DNA polymerase IV UniProtKB:Q47155|PTN000118193 protein taxon:83333 20180216 GO_Central 2922 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG13945 ydhK GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Uncharacterized transporter YdhK UniProtKB:P76186|PTN000775498 protein taxon:83333 20170420 GO_Central 3211 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG10833 recQ GO:0005515 PMID:21873635 IBA EcoGene:EG10833|PANTHER:PTN001787175 F ATP-dependent DNA helicase RecQ UniProtKB:P15043|PTN001009465 protein taxon:83333 20180411 GO_Central 4429 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG12181 grxD GO:0005515 PMID:21873635 IBA EcoGene:EG12181|MGI:MGI:1353653|PANTHER:PTN000033618|PomBase:SPAPB2B4.02|PomBase:SPBC26H8.06|TAIR:locus:2093297|TAIR:locus:2135363|UniProtKB:O76003|UniProtKB:Q86SX6 F Glutaredoxin 4 UniProtKB:P0AC69|PTN000033708 protein taxon:83333 20180514 GO_Central 4431 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG12822 aaeB GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F p-hydroxybenzoic acid efflux pump subunit AaeB UniProtKB:P46481|PTN000775499 protein taxon:83333 20170420 GO_Central 4630 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG20044 dctA GO:0005515 PMID:21873635 IBA EcoGene:EG20044|PANTHER:PTN000238506 F Aerobic C4-dicarboxylate transport protein UniProtKB:P0A830|PTN000238526 protein taxon:83333 20170608 GO_Central #------------ # GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 1 3489 GO_AR:0000008 Warning Do not annotate to: GO:0040007 'growth' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate EcoGene EG10098 atpA GO:0040007 PMID:21873635 IBA PANTHER:PTN000389972|UniProtKB:P9WPU7 P ATP synthase subunit alpha UniProtKB:P0ABB0|PTN001032648 protein taxon:83333 20180504 GO_Central #------------