*GAF Parser Summary*

There are 641 GAF parser warnings.

*GAF summary*

Found 234368 annotations in 234380 lines.

*GAF Validation Summary*
Errors are reported first.

For rule GO_AR:0000001 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000001)
 Basic GAF checks, there are 9194 violations with type Error.

For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003)
 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there are 91 violations with type Warning.

For rule GO_AR:0000006 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000006)
 IEP usage is restricted to terms from the Biological Process ontology, there are 4 violations with type Warning.

For rule GO_AR:0000007 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000007)
 IPI should not be used with catalytic activity molecular function terms, there is one violation with type Warning.

For rule GO_AR:0000013 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000013)
 Taxon-appropriate annotation check, there are 6633 violations with type Warning.

For rule GO_AR:0000017 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000017)
 IDA annotations must not have a With/From entry, there are 2 violations with type Warning.

For rule GO_AR:0000018 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000018)
 IPI annotations require a With/From entry, there are 16 violations with type Warning.


*GAF Prediction Summary*

Found 3388 predictions, see prediction file for details.

*Used Ontology Summary*

	go/extensions/go-gaf