#Line number RuleID ViolationType Message Line #------------ # GAF Parser ERROR count: 0 #------------ # GAF Parser WARNING count: 10 16 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB Q08698 nrdE Contributes_to GO:0004748 PMID:7809142 IDA F protein taxon:90371 20100519 GONUTS 499 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P68871 HBB Contributes_to GO:0031720 PMID:19740759 IDA F protein taxon:9606 20101214 GONUTS 501 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P68871 HBB Contributes_to GO:0004601 PMID:19740759 IDA F protein taxon:9606 20101214 GONUTS 521 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P69905 HBA2 Contributes_to GO:0031720 PMID:19740759 IDA F protein taxon:9606 20101214 GONUTS 523 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P69905 HBA2 Contributes_to GO:0004601 PMID:19740759 IDA F protein taxon:9606 20101214 GONUTS 543 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P00738 HP Contributes_to GO:0004601 PMID:19740759 IDA F protein taxon:9606 20101214 GONUTS 842 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P14565 traI Contributes_to GO:0004520 PMID:7499339 IDA F protein taxon:83333 20110517 GONUTS 1009 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P76014 dhaL Contributes_to GO:0016740 PMID:11350937 IDA F protein taxon:83333 20110524 GONUTS 1012 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P37349 dhaM Contributes_to GO:0016740 PMID:11350937 IDA F protein taxon:83333 20110524 GONUTS 1013 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P76015 dhaK Contributes_to GO:0016740 PMID:11350937 IDA F protein taxon:83333 20110524 GONUTS #------------ #------------ # Validation for #1159 annotations in 1168 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000001 Basic GAF checks Error count: 4 722 GO_AR:0000001 Error IEA evidence code present with a date more than a year old '20110217' UniProtKB P29430 pedA GO:0042742 GO_REF:0000004 IEA SP_KW:KW-0044 P protein taxon:1254 20110217 GONUTS 946 GO_AR:0000001 Error IEA evidence code present with a date more than a year old '20110330' UniProtKB Q9QWR8 Naga GO:0008456 GO_REF:0000003 IEA EC:3.2.1.49 F protein taxon:10090 20110330 GONUTS 1061 GO_AR:0000001 Error IEA evidence code present with a date more than a year old '20110417' UniProtKB P0ACS2 soxR GO:0006979 GO_REF:0000002 IEA InterPro:IPR010211 P protein taxon:83333 20110417 GONUTS 1125 GO_AR:0000001 Error IEA evidence code present with a date more than a year old '20110417' UniProtKB Q08638 bglA GO:0000272 GO_REF:0000004 IEA SP_KW:KW-0624 P protein taxon:2336 20110417 GONUTS #------------ # GO_AR:0000014 Valid GO term ID Error count: 11 496 GO_AR:0000014 Error The id 'GO:0003706' in the annotation is an obsolete class UniProtKB P55055 NR1H2 GO:0003706 PMID:11090131 IDA F protein taxon:9606 20110115 GONUTS 505 GO_AR:0000014 Error The id 'GO:0035121' in the annotation is an obsolete class UniProtKB P22607 FGFR3 GO:0035121 PMID:20582225 IMP P protein taxon:9606 20101212 GONUTS 538 GO_AR:0000014 Error The id 'GO:0003706' in the annotation is an obsolete class UniProtKB Q13133 NR1H3 GO:0003706 PMID:11090131 IDA F protein taxon:9606 20110115 GONUTS 595 GO_AR:0000014 Error The id 'GO:0019861' in the annotation is an obsolete class UniProtKB P46869 FLA10 GO:0019861 PMID:16527740 IDA C protein taxon:3055 20110114 GONUTS 596 GO_AR:0000014 Error The id 'GO:0019861' in the annotation is an obsolete class UniProtKB Q9SMH5 DHC1B GO:0019861 PMID:16527740 IDA C protein taxon:3055 20110114 GONUTS 600 GO_AR:0000014 Error The id 'GO:0019861' in the annotation is an obsolete class UniProtKB Q7XA07 D1BLIC GO:0019861 PMID:16527740 IDA C protein taxon:3055 20110119 GONUTS 631 GO_AR:0000014 Error The id 'GO:0008634' in the annotation is an obsolete class UniProtKB O95238 SPDEF GO:0008634 PMID:21229552 IDA P protein taxon:9606 20110116 GONUTS 702 GO_AR:0000014 Error The id 'GO:0070215' in the annotation is an obsolete class, suggested replacements: GO:0097371 UniProtKB P02340 Tp53 GO:0070215 PMID:20818388 IPI UniProtKB:P23804 F protein taxon:10090 20110121 GONUTS 850 GO_AR:0000014 Error The id 'GO:2000154' in the annotation is an obsolete class UniProtKB P0A6X7 ihfA NOT GO:2000154 PMID:12686630 IMP P protein taxon:83333 20110415 GONUTS 1032 GO_AR:0000014 Error The id 'GO:0006184' in the annotation is an obsolete class UniProtKB Q53770 tetM GO:0006184 PMID:7826010 EXP P protein taxon:1280 20110416 GONUTS 1147 GO_AR:0000014 Error The id 'GO:0045885' in the annotation is an obsolete class UniProtKB P49450 CENPA GO:0045885 PMID:21423629 IMP P protein taxon:9606 20110417 GONUTS #------------ # GO_AR:0000007 IPI should not be used with catalytic activity molecular function terms Warning count: 1 531 GO_AR:0000007 Warning IPI should not be used with catalytic activity molecular function terms UniProtKB Q9DBH0 Wwp2 GO:0004842 PMID:15047715 IPI UniProtKB:P20263 F protein taxon:10090 20101213 GONUTS #------------ # GO_AR:0000014 Valid GO term ID Warning count: 29 121 GO_AR:0000014 Warning The id 'GO:0035413' in the annotation is an alternate id for: GO:0090263 UniProtKB P56704 WNT3A GO:0035413 PMID:20723538 IDA P protein taxon:9606 20101214 GONUTS 149 GO_AR:0000014 Warning The id 'GO:0035083' in the annotation is an alternate id for: GO:0035082 UniProtKB Q1LV15 wdr69 GO:0035083 PMID:20568242 IMP P protein taxon:7955 20100924 GONUTS 218 GO_AR:0000014 Warning The id 'GO:0005932' in the annotation is an alternate id for: GO:0036064 UniProtKB Q8TAM1 BBS10 GO:0005932 PMID:19190184 IDA C protein taxon:9606 20101130 GONUTS 219 GO_AR:0000014 Warning The id 'GO:0042384' in the annotation is an alternate id for: GO:0060271 UniProtKB Q8TAM1 BBS10 GO:0042384 PMID:19190184 IMP P protein taxon:9606 20100926 GONUTS 222 GO_AR:0000014 Warning The id 'GO:0005932' in the annotation is an alternate id for: GO:0036064 UniProtKB Q6ZW61 BBS12 GO:0005932 PMID:19190184 IDA C protein taxon:9606 20101130 GONUTS 224 GO_AR:0000014 Warning The id 'GO:0042384' in the annotation is an alternate id for: GO:0060271 UniProtKB Q6ZW61 BBS12 GO:0042384 PMID:19190184 IMP P protein taxon:9606 20101010 GONUTS 299 GO_AR:0000014 Warning The id 'GO:0043234' in the annotation is an alternate id for: GO:0032991 UniProtKB P07013 priB GO:0043234 PMID:8663104 IPI UniProtKB:P0A8J2|UniProtKB:P0ACB0|UniProtKB:P0AEF0|UniProtKB:P17888 C protein taxon:83333 20101107 GONUTS 316 GO_AR:0000014 Warning The id 'GO:0006916' in the annotation is an alternate id for: GO:0043066 UniProtKB Q02858 Tek GO:0006916 PMID:16219799 IMP P protein taxon:10090 20101025 GONUTS 379 GO_AR:0000014 Warning The id 'GO:0006916' in the annotation is an alternate id for: GO:0043066 UniProtKB O30916 sopB GO:0006916 PMID:15642738 IMP P protein taxon:90371 20110414 GONUTS 392 GO_AR:0000014 Warning The id 'GO:0042787' in the annotation is an alternate id for: GO:0006511 UniProtKB P51965 UBE2E1 GO:0042787 PMID:18439907 IMP P protein taxon:9606 20101124 GONUTS 406 GO_AR:0000014 Warning The id 'GO:0043234' in the annotation is an alternate id for: GO:0032991 UniProtKB P0A8J2 dnaT GO:0043234 PMID:8663104 IPI UniProtKB:P07013|UniProtKB:P0ACB0|UniProtKB:P0AEF0|UniProtKB:P17888 C protein taxon:83333 20101105 GONUTS 411 GO_AR:0000014 Warning The id 'GO:0043234' in the annotation is an alternate id for: GO:0032991 UniProtKB P17888 priA GO:0043234 PMID:8663104 IPI UniProtKB:P07013|UniProtKB:P0A8J2|UniProtKB:P0ACB0|UniProtKB:P0AEF0 C protein taxon:83333 20101105 GONUTS 438 GO_AR:0000014 Warning The id 'GO:0032863' in the annotation is an alternate id for: GO:0090630 UniProtKB Q99LJ8 Nus1 GO:0032863 PMID:19805174 IMP P protein taxon:10090 20101107 GONUTS 444 GO_AR:0000014 Warning The id 'GO:0006916' in the annotation is an alternate id for: GO:0043066 UniProtKB Q3TCH7 Cul4a GO:0006916 PMID:18339895 IMP P protein taxon:10090 20101107 GONUTS 470 GO_AR:0000014 Warning The id 'GO:0043234' in the annotation is an alternate id for: GO:0032991 UniProtKB P0ACB0 dnaB GO:0043234 PMID:8663104 IPI UniProtKB:P07013|UniProtKB:P0A8J2|UniProtKB:P0AEF0|UniProtKB:P17888 C protein taxon:83333 20101107 GONUTS 472 GO_AR:0000014 Warning The id 'GO:0043234' in the annotation is an alternate id for: GO:0032991 UniProtKB P0AEF0 dnaC GO:0043234 PMID:8663104 IPI UniProtKB:P07013|UniProtKB:P0A8J2|UniProtKB:P0ACB0|UniProtKB:P17888 C protein taxon:83333 20101107 GONUTS 540 GO_AR:0000014 Warning The id 'GO:0043088' in the annotation is an alternate id for: GO:0043087 UniProtKB O14907 TAX1BP3 GO:0043088 PMID:21139582 IDA P protein taxon:9606 20101215 GONUTS 544 GO_AR:0000014 Warning The id 'GO:0035413' in the annotation is an alternate id for: GO:0090263 UniProtKB P97299 Sfrp2 GO:0035413 PMID:20723538 IDA P protein taxon:10090 20101214 GONUTS 568 GO_AR:0000014 Warning The id 'GO:0043088' in the annotation is an alternate id for: GO:0043087 UniProtKB P03126 E6 GO:0043088 PMID:21139582 IDA P protein taxon:333760 20101215 GONUTS 570 GO_AR:0000014 Warning The id 'GO:0001105' in the annotation is an alternate id for: GO:0003713 UniProtKB P70662 Ldb1 GO:0001105 PMID:20570862 IMP F protein taxon:10090 20101215 GONUTS 636 GO_AR:0000014 Warning The id 'GO:0090004' in the annotation is an alternate id for: GO:1903078 UniProtKB P0C605 Prkg1 GO:0090004 PMID:19127022 IDA P protein taxon:10090 20110120 GONUTS 637 GO_AR:0000014 Warning The id 'GO:0042511' in the annotation is an alternate id for: GO:0042531 UniProtKB P17777 Lif GO:0042511 PMID:20624457 IDA P protein taxon:10116 20110116 GONUTS 638 GO_AR:0000014 Warning The id 'GO:0042517' in the annotation is an alternate id for: GO:0042531 UniProtKB P17777 Lif GO:0042517 PMID:20624457 IDA P protein taxon:10116 20110116 GONUTS 641 GO_AR:0000014 Warning The id 'GO:0042511' in the annotation is an alternate id for: GO:0042531 UniProtKB P01581 Ifng GO:0042511 PMID:20624457 IDA P protein taxon:10116 20110116 GONUTS 682 GO_AR:0000014 Warning The id 'GO:0032403' in the annotation is an alternate id for: GO:0044877 UniProtKB Q6IMN6 CAPRIN2 GO:0032403 PMID:18762581 IPI UniProtKB:O15169|UniProtKB:O75197 F protein taxon:9606 20110121 GONUTS 958 GO_AR:0000014 Warning The id 'GO:0006916' in the annotation is an alternate id for: GO:0043066 UniProtKB Q96JZ2 HSH2D GO:0006916 PMID:15569688 IDA P protein taxon:9606 20110402 GONUTS 974 GO_AR:0000014 Warning The id 'GO:0031513' in the annotation is an alternate id for: GO:0097730 UniProtKB Q9HBA0 TRPV4 GO:0031513 PMID:18024594 IDA C protein taxon:9606 20110601 GONUTS 978 GO_AR:0000014 Warning The id 'GO:0032862' in the annotation is an alternate id for: GO:0090630 UniProtKB O52623 sopE GO:0032862 PMID:9630225 IDA P protein taxon:90371 20110411 GONUTS 1092 GO_AR:0000014 Warning The id 'GO:0030529' in the annotation is an alternate id for: GO:1990904 UniProtKB Q9M5P4 CRS2 GO:0030529 PMID:11179231 IDA C protein taxon:4577 20110416 GONUTS #------------