*GAF Parser Summary* There are 1455 GAF parser warnings. *GAF summary* Found 63179 annotations in 63187 lines. *GAF Validation Summary* Errors are reported first. For rule GO_AR:0000001 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000001) Basic GAF checks, there are 2899 violations with type Error. For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014) Valid GO term ID, there are 119 violations with type Error. For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003) Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there are 42 violations with type Warning. For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014) Valid GO term ID, there are 466 violations with type Warning. *GAF Prediction Summary* Found 2939 predictions, see prediction file for details. *Used Ontology Summary* go/extensions/go-gaf