#Line number RuleID ViolationType Message Line #------------ # GAF Parser ERROR count: 0 #------------ # GAF Parser WARNING count: 30 35 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RXM6 livF CONTRIBUTES_TO GO:0015807 PAINT_REF:43820 IBA PANTHER:PTN000657089 P ABC transporter ATP-binding protein UniProtKB:Q9RXM6|PTN000657116 protein taxon:243230 20170427 GO_Central 52 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RYP9 DR_A0260 CONTRIBUTES_TO GO:0015658 PAINT_REF:43820 IBA PANTHER:PTN000657089 F ABC transporter ATP-binding protein UniProtKB:Q9RYP9|PTN000657099 protein taxon:243230 20170427 GO_Central 137 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RUL7 pdxS CONTRIBUTES_TO GO:0004359 PAINT_REF:31829 IBA PANTHER:PTN000782634 F Pyridoxal 5'-phosphate synthase subunit PdxS UniProtKB:Q9RUL7|PTN000523404 protein taxon:243230 20170427 GO_Central 182 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RYP9 DR_A0260 CONTRIBUTES_TO GO:0015807 PAINT_REF:43820 IBA PANTHER:PTN000657089 P ABC transporter ATP-binding protein UniProtKB:Q9RYP9|PTN000657099 protein taxon:243230 20170427 GO_Central 271 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RYI8 DR_A0324 CONTRIBUTES_TO GO:0022857 PAINT_REF:43820 IBA PANTHER:PTN000657089 F ABC transporter ATP-binding protein UniProtKB:Q9RYI8|PTN000657105 protein taxon:243230 20170427 GO_Central 358 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RWI4 carA CONTRIBUTES_TO GO:0004088 PAINT_REF:11405 IBA PANTHER:PTN000150382 F Carbamoyl-phosphate synthase small chain UniProtKB:Q9RWI4|PTN000150412 protein taxon:243230 20170427 GO_Central 483 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RYI8 DR_A0324 CONTRIBUTES_TO GO:0015807 PAINT_REF:43820 IBA PANTHER:PTN000657089 P ABC transporter ATP-binding protein UniProtKB:Q9RYI8|PTN000657105 protein taxon:243230 20170427 GO_Central 528 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RR77 DR_2620 CONTRIBUTES_TO GO:0004129 PAINT_REF:10422 IBA PANTHER:PTN000046094 F Cytochrome C oxidase subunit III UniProtKB:Q9RR77|PTN000046174 protein taxon:243230 20170427 GO_Central 861 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RVJ4 DR_1034 CONTRIBUTES_TO GO:0015658 PAINT_REF:43820 IBA PANTHER:PTN000657089 F ABC transporter ATP-binding protein UniProtKB:Q9RVJ4|PTN000657117 protein taxon:243230 20170427 GO_Central 908 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RXM6 livF CONTRIBUTES_TO GO:0022857 PAINT_REF:43820 IBA PANTHER:PTN000657089 F ABC transporter ATP-binding protein UniProtKB:Q9RXM6|PTN000657116 protein taxon:243230 20170427 GO_Central 1053 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RSK6 DR_2118 CONTRIBUTES_TO GO:0015658 PAINT_REF:43820 IBA PANTHER:PTN000657089 F ABC transporter ATP-binding protein UniProtKB:Q9RSK6|PTN000657147 protein taxon:243230 20170427 GO_Central 1089 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RSK6 DR_2118 CONTRIBUTES_TO GO:0015807 PAINT_REF:43820 IBA PANTHER:PTN000657089 P ABC transporter ATP-binding protein UniProtKB:Q9RSK6|PTN000657147 protein taxon:243230 20170427 GO_Central 1098 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RVJ4 DR_1034 CONTRIBUTES_TO GO:0015807 PAINT_REF:43820 IBA PANTHER:PTN000657089 P ABC transporter ATP-binding protein UniProtKB:Q9RVJ4|PTN000657117 protein taxon:243230 20170427 GO_Central 1125 WARNING Repairing qualifier 'colocalizes_with' from: COLOCALIZES_WITH UniProtKB Q9RWV6 DR_0559 COLOCALIZES_WITH GO:0005840 PAINT_REF:15239 IBA PANTHER:PTN000391355 C Fibronectin/fibrinogen-binding protein, putative UniProtKB:Q9RWV6|PTN001433099 protein taxon:243230 20170427 GO_Central 1139 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RU87 nuoB CONTRIBUTES_TO GO:0003954 PAINT_REF:11995 IBA PANTHER:PTN000242188 F NADH-quinone oxidoreductase subunit B UniProtKB:Q9RU87|PTN000242253 protein taxon:243230 20170427 GO_Central 1141 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RXM6 livF CONTRIBUTES_TO GO:0015658 PAINT_REF:43820 IBA PANTHER:PTN000657089 F ABC transporter ATP-binding protein UniProtKB:Q9RXM6|PTN000657116 protein taxon:243230 20170427 GO_Central 1149 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RU99 DR_1493 CONTRIBUTES_TO GO:0003954 PAINT_REF:43507 IBA PANTHER:PTN000511780 F NADH dehydrogenase UniProtKB:Q9RU99|PTN000511828 protein taxon:243230 20170427 GO_Central 1191 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RVV9 rpoB CONTRIBUTES_TO GO:0003899 PAINT_REF:20856 IBA PANTHER:PTN000465875 F DNA-directed RNA polymerase subunit beta UniProtKB:Q9RVV9|PTN000466099 protein taxon:243230 20170427 GO_Central 1246 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RRB5 tgt CONTRIBUTES_TO GO:0008479 PAINT_REF:21148 IBA PANTHER:PTN000239043 F Queuine tRNA-ribosyltransferase UniProtKB:Q9RRB5|PTN000239162 protein taxon:243230 20170427 GO_Central 1267 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RVW0 rpoC CONTRIBUTES_TO GO:0003899 PAINT_REF:19376 IBA PANTHER:PTN000453461 F DNA-directed RNA polymerase subunit beta' UniProtKB:Q9RVW0|PTN000453449 protein taxon:243230 20170427 GO_Central 1344 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RVJ4 DR_1034 CONTRIBUTES_TO GO:0022857 PAINT_REF:43820 IBA PANTHER:PTN000657089 F ABC transporter ATP-binding protein UniProtKB:Q9RVJ4|PTN000657117 protein taxon:243230 20170427 GO_Central 1438 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RVT1 trpB CONTRIBUTES_TO GO:0004834 PAINT_REF:42882 IBA PANTHER:PTN000034394 F Tryptophan synthase beta chain UniProtKB:Q9RVT1|PTN000034423 protein taxon:243230 20170427 GO_Central 1486 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RSK6 DR_2118 CONTRIBUTES_TO GO:0022857 PAINT_REF:43820 IBA PANTHER:PTN000657089 F ABC transporter ATP-binding protein UniProtKB:Q9RSK6|PTN000657147 protein taxon:243230 20170427 GO_Central 1667 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RRX5 pheT CONTRIBUTES_TO GO:0004826 PAINT_REF:10947 IBA PANTHER:PTN000101805 F Phenylalanine--tRNA ligase beta subunit UniProtKB:Q9RRX5|PTN000101919 protein taxon:243230 20170427 GO_Central 1716 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RT53 gyrA CONTRIBUTES_TO GO:0003918 PAINT_REF:43493 IBA PANTHER:PTN001607041 F DNA gyrase subunit A UniProtKB:Q9RT53|PTN000018862 protein taxon:243230 20170427 GO_Central 1953 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RYP9 DR_A0260 CONTRIBUTES_TO GO:0022857 PAINT_REF:43820 IBA PANTHER:PTN000657089 F ABC transporter ATP-binding protein UniProtKB:Q9RYP9|PTN000657099 protein taxon:243230 20170427 GO_Central 1963 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RU52 DR_1542 CONTRIBUTES_TO GO:0004485 PAINT_REF:22855 IBA PANTHER:PTN000523406 F Methylcrotonoyl-CoA carboxylase UniProtKB:Q9RU52|PTN000523478 protein taxon:243230 20170427 GO_Central 1982 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RUL8 pdxT CONTRIBUTES_TO GO:0004359 PAINT_REF:31559 IBA PANTHER:PTN000774355 F Pyridoxal 5'-phosphate synthase subunit PdxT UniProtKB:Q9RUL8|PTN000774378 protein taxon:243230 20170427 GO_Central 1993 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RTJ6 DR_1766 CONTRIBUTES_TO GO:0004049 PAINT_REF:43418 IBA PANTHER:PTN000230074 F Anthranilate synthase component 2 UniProtKB:Q9RTJ6|PTN000230106 protein taxon:243230 20170427 GO_Central 2124 WARNING Repairing qualifier 'contributes_to' from: CONTRIBUTES_TO UniProtKB Q9RYI8 DR_A0324 CONTRIBUTES_TO GO:0015658 PAINT_REF:43820 IBA PANTHER:PTN000657089 F ABC transporter ATP-binding protein UniProtKB:Q9RYI8|PTN000657105 protein taxon:243230 20170427 GO_Central #------------ #------------ # Validation for #2142 annotations in 2150 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 1 1424 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field UniProtKB Q9RRG7 dctA GO:0005515 PAINT_REF:42865 IBA PANTHER:PTN000238506 F C4-dicarboxylate transport protein UniProtKB:Q9RRG7|PTN000238509 protein taxon:243230 20170427 GO_Central #------------ # GO_AR:0000014 Valid GO term ID Warning count: 25 29 GO_AR:0000014 Warning The id 'GO:0022891' in the annotation is an alternate id for: GO:0022857 UniProtKB Q9RYN1 DR_A0279 GO:0022891 PAINT_REF:30572 IBA PANTHER:PTN001254814 F Uncharacterized protein UniProtKB:Q9RYN1|PTN001577370 protein taxon:243230 20170427 GO_Central 67 GO_AR:0000014 Warning The id 'GO:0022891' in the annotation is an alternate id for: GO:0022857 UniProtKB Q9RZ93 DR_A0061 GO:0022891 PAINT_REF:23501 IBA PANTHER:PTN000605491 F Drug transport protein, putative UniProtKB:Q9RZ93|PTN000606076 protein taxon:243230 20170427 GO_Central 147 GO_AR:0000014 Warning The id 'GO:0015197' in the annotation is an alternate id for: GO:1904680 UniProtKB Q9RVP1 DR_0986 GO:0015197 PAINT_REF:30290 IBA PANTHER:PTN000767645 F Extracellular solute binding protein, family 5 UniProtKB:Q9RVP1|PTN000767656 protein taxon:243230 20170427 GO_Central 164 GO_AR:0000014 Warning The id 'GO:0015197' in the annotation is an alternate id for: GO:1904680 UniProtKB Q9RT14 DR_1955 GO:0015197 PAINT_REF:30290 IBA PANTHER:PTN000767645 F Extracellular solute-binding protein, family 5 UniProtKB:Q9RT14|PTN000767702 protein taxon:243230 20170427 GO_Central 172 GO_AR:0000014 Warning The id 'GO:0015197' in the annotation is an alternate id for: GO:1904680 UniProtKB Q9RU24 DR_1571 GO:0015197 PAINT_REF:30290 IBA PANTHER:PTN000767645 F Probable ABC transporter-binding protein DR_1571 UniProtKB:Q9RU24|PTN001250554 protein taxon:243230 20170427 GO_Central 228 GO_AR:0000014 Warning The id 'GO:0015197' in the annotation is an alternate id for: GO:1904680 UniProtKB Q9RTP5 DR_1712 GO:0015197 PAINT_REF:30290 IBA PANTHER:PTN000767645 F Extracellular solute-binding protein, family 5 UniProtKB:Q9RTP5|PTN000767701 protein taxon:243230 20170427 GO_Central 229 GO_AR:0000014 Warning The id 'GO:0022891' in the annotation is an alternate id for: GO:0022857 UniProtKB Q9RXQ1 DR_0258 GO:0022891 PAINT_REF:23501 IBA PANTHER:PTN000605491 F Multidrug transporter UniProtKB:Q9RXQ1|PTN000606073 protein taxon:243230 20170427 GO_Central 430 GO_AR:0000014 Warning The id 'GO:0015197' in the annotation is an alternate id for: GO:1904680 UniProtKB Q9RXF0 DR_0363 GO:0015197 PAINT_REF:30290 IBA PANTHER:PTN000767645 F Peptide ABC transporter, periplasmic peptide-binding protein, putative UniProtKB:Q9RXF0|PTN000767657 protein taxon:243230 20170427 GO_Central 497 GO_AR:0000014 Warning The id 'GO:0015197' in the annotation is an alternate id for: GO:1904680 UniProtKB Q9RZS2 DR_B0042 GO:0015197 PAINT_REF:30290 IBA PANTHER:PTN000767645 F Oligopeptide transport periplasmic protein, putative UniProtKB:Q9RZS2|PTN000775521 protein taxon:243230 20170427 GO_Central 628 GO_AR:0000014 Warning The id 'GO:0022891' in the annotation is an alternate id for: GO:0022857 UniProtKB Q9RWV2 DR_0563 GO:0022891 PAINT_REF:32243 IBA PANTHER:PTN000789936 F Maltose ABC transporter, permease protein UniProtKB:Q9RWV2|PTN000789944 protein taxon:243230 20170427 GO_Central 678 GO_AR:0000014 Warning The id 'GO:0089712' in the annotation is an alternate id for: GO:0070778 UniProtKB Q9RRG7 dctA GO:0089712 PAINT_REF:42865 IBA PANTHER:PTN000238506 P C4-dicarboxylate transport protein UniProtKB:Q9RRG7|PTN000238509 protein taxon:243230 20170427 GO_Central 918 GO_AR:0000014 Warning The id 'GO:0022891' in the annotation is an alternate id for: GO:0022857 UniProtKB Q9RVM3 DR_1004 GO:0022891 PAINT_REF:30561 IBA PANTHER:PTN001254638 F Cation transporter UniProtKB:Q9RVM3|PTN001254669 protein taxon:243230 20170427 GO_Central 968 GO_AR:0000014 Warning The id 'GO:0022891' in the annotation is an alternate id for: GO:0022857 UniProtKB Q9RX41 DR_0474 GO:0022891 PAINT_REF:30572 IBA PANTHER:PTN001254814 F ABC transporter permease UniProtKB:Q9RX41|PTN001254881 protein taxon:243230 20170427 GO_Central 970 GO_AR:0000014 Warning The id 'GO:0022891' in the annotation is an alternate id for: GO:0022857 UniProtKB Q9RVM2 DR_1005 GO:0022891 PAINT_REF:30561 IBA PANTHER:PTN001254638 F Cation transporter UniProtKB:Q9RVM2|PTN001254668 protein taxon:243230 20170427 GO_Central 1162 GO_AR:0000014 Warning The id 'GO:0090484' in the annotation is an alternate id for: GO:0015238 UniProtKB Q9RVM2 DR_1005 GO:0090484 PAINT_REF:30561 IBA PANTHER:PTN000778000 F Cation transporter UniProtKB:Q9RVM2|PTN001254668 protein taxon:243230 20170427 GO_Central 1269 GO_AR:0000014 Warning The id 'GO:0090484' in the annotation is an alternate id for: GO:0015238 UniProtKB Q9RVM3 DR_1004 GO:0090484 PAINT_REF:30561 IBA PANTHER:PTN000778000 F Cation transporter UniProtKB:Q9RVM3|PTN001254669 protein taxon:243230 20170427 GO_Central 1489 GO_AR:0000014 Warning The id 'GO:0044822' in the annotation is an alternate id for: GO:0003723 UniProtKB Q9RXJ0 rplE GO:0044822 PAINT_REF:11994 IBA PANTHER:PTN000242048 F 50S ribosomal protein L5 UniProtKB:Q9RXJ0|PTN000242174 protein taxon:243230 20170427 GO_Central 1491 GO_AR:0000014 Warning The id 'GO:0015197' in the annotation is an alternate id for: GO:1904680 UniProtKB Q9RUU1 DR_1290 GO:0015197 PAINT_REF:30290 IBA PANTHER:PTN000767645 F Extracellular solute-binding protein, family 5 UniProtKB:Q9RUU1|PTN000767703 protein taxon:243230 20170427 GO_Central 1551 GO_AR:0000014 Warning The id 'GO:0044822' in the annotation is an alternate id for: GO:0003723 UniProtKB Q9RXY0 rpsI GO:0044822 PAINT_REF:21569 IBA PANTHER:PTN000490829 F 30S ribosomal protein S9 UniProtKB:Q9RXY0|PTN000490975 protein taxon:243230 20170427 GO_Central 1609 GO_AR:0000014 Warning The id 'GO:0022891' in the annotation is an alternate id for: GO:0022857 UniProtKB Q9RUF0 DR_1436 GO:0022891 PAINT_REF:32243 IBA PANTHER:PTN000789936 F ABC transporter, permease protein, MalFG family UniProtKB:Q9RUF0|PTN000790009 protein taxon:243230 20170427 GO_Central 1685 GO_AR:0000014 Warning The id 'GO:0022891' in the annotation is an alternate id for: GO:0022857 UniProtKB Q9RUQ5 DR_1327 GO:0022891 PAINT_REF:23501 IBA PANTHER:PTN000605491 F Multidrug-efflux transporter UniProtKB:Q9RUQ5|PTN000606075 protein taxon:243230 20170427 GO_Central 1794 GO_AR:0000014 Warning The id 'GO:0015197' in the annotation is an alternate id for: GO:1904680 UniProtKB Q9RYR2 DR_A0246 GO:0015197 PAINT_REF:30290 IBA PANTHER:PTN000767645 F Extracellular solute-binding protein, family 5 UniProtKB:Q9RYR2|PTN000767700 protein taxon:243230 20170427 GO_Central 1858 GO_AR:0000014 Warning The id 'GO:0022891' in the annotation is an alternate id for: GO:0022857 UniProtKB Q9RYR1 DR_A0247 GO:0022891 PAINT_REF:23501 IBA PANTHER:PTN000605491 F Drug transport protein, putative UniProtKB:Q9RYR1|PTN000606074 protein taxon:243230 20170427 GO_Central 1884 GO_AR:0000014 Warning The id 'GO:0022891' in the annotation is an alternate id for: GO:0022857 UniProtKB Q9RSM6 DR_2098 GO:0022891 PAINT_REF:23501 IBA PANTHER:PTN000605491 F MFS transporter UniProtKB:Q9RSM6|PTN002362445 protein taxon:243230 20170427 GO_Central 2108 GO_AR:0000014 Warning The id 'GO:0044822' in the annotation is an alternate id for: GO:0003723 UniProtKB Q9RXJ9 rplB GO:0044822 PAINT_REF:13691 IBA PANTHER:PTN000343556 F 50S ribosomal protein L2 UniProtKB:Q9RXJ9|PTN000343720 protein taxon:243230 20170427 GO_Central #------------