#Line number RuleID ViolationType Message Line #------------ #------------ # Validation for #343161 annotations in 343189 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 17 64001 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:105980 Cntn1 GO:0005515 MGI:MGI:4438147|PMID:19458237 IDA F contactin 1 CNTN|F3cam|usl protein taxon:10090 20101217 MGI has_input(MGI:MGI:88323) 64023 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:104518 Cntn2 GO:0005515 MGI:MGI:4438147|PMID:19458237 IDA F contactin 2 axonin|D130012K04Rik|TAG1|TAG-1|Tax protein taxon:10090 20101217 MGI has_input(MGI:MGI:88323) 98645 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:88379 F13b GO:0005515 MGI:MGI:5645809|PMID:18224415 TAS F coagulation factor XIII, beta subunit Cf13b|Cf-13b protein taxon:10090 20160927 GO_Noctua has_input(MGI:MGI:1921395) 101700 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:2446216 Fbxo2 GO:0005515 MGI:MGI:3573989|PMID:15723043 IDA F F-box protein 2 Fbs1|FBX2|NFB42|Prpl4 protein taxon:10090 20050901 MGI 101702 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:2446216 Fbxo2 GO:0005515 MGI:MGI:3576440|PMID:15809437 IDA F F-box protein 2 Fbs1|FBX2|NFB42|Prpl4 protein taxon:10090 20080812 MGI has_input(MGI:MGI:95819) 101912 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:1354743 Fbxo6 GO:0005515 MGI:MGI:5644019|PMID:21062743 IDA F F-box protein 6 FBG2|Fbs2|Fbx6b|Fbxo6b protein taxon:10090 20150602 ParkinsonsUK-UCL 101913 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:1354743 Fbxo6 GO:0005515 MGI:MGI:2679753|PMID:12939278 IDA F F-box protein 6 FBG2|Fbs2|Fbx6b|Fbxo6b protein taxon:10090 20090903 UniProt 106879 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:2444668 Fnip1 GO:0005515 MGI:MGI:5635927|PMID:25775561 TAS F folliculin interacting protein 1 A730024A03Rik protein taxon:10090 20160921 GO_Noctua has_input(MGI:MGI:2442184),negatively_regulates(GO:0003674),negatively_regulates(GO:0007005),negatively_regulates(GO:0038202) 106894 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:2683054 Fnip2 GO:0005515 MGI:MGI:5635927|PMID:25775561 TAS F folliculin interacting protein 2 D630023B12Rik protein taxon:10090 20160921 GO_Noctua has_input(MGI:MGI:2442184),negatively_regulates(GO:0003674),negatively_regulates(GO:0007005),negatively_regulates(GO:0038202) 151971 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:96605 Itga6 GO:0005515 MGI:MGI:3761951|PMID:17716972 IPI F integrin alpha 6 5033401O05Rik|Cd49f protein taxon:10090 20180201 MGI 184152 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:2385618 Mmrn2 GO:0005515 MGI:MGI:5780028|PMID:25745997 IDA UniProtKB:Q8VCP9 F multimerin 2 Emilin3|EndoGlyx-1|ENDOGLYX1 protein taxon:10090 20161223 GO_Noctua has_input(MGI:MGI:1914114) 245657 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:104908 Ptk2b GO:0005515 MGI:MGI:5758807|PMID:12771146 IPI F PTK2 protein tyrosine kinase 2 beta CAKbeta|calcium-dependent tyrosine kinase|cellular adhesion kinase beta|E430023O05Rik|proline-rich tyrosine kinase 2|PYK2|Raftk|related adhesion focal tyrosine kinase protein taxon:10090 20180402 GO_Noctua has_input(PR:000049741),occurs_in(CL:0000057),part_of(GO:0004713) 268638 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:98280 Selp GO:0005515 MGI:MGI:3757618|PMID:8562500 IDA F selectin, platelet CD62P|Grmp|P-selectin protein taxon:10090 20071025 MGI 272469 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:98294 Shb GO:0005515 MGI:MGI:64405|PMID:8302579 IDA F src homology 2 domain-containing transforming protein B protein taxon:10090 20170704 MGI 272640 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:98297 Shh GO:0005515 MGI:MGI:2149274|PMID:11476578 IDA F sonic hedgehog Hhg1|Hx|Hxl3|M100081 protein taxon:10090 20091123 MGI occurs_in(EMAPA:32906) 295553 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:109355 Stx1a GO:0005515 MGI:MGI:76787|PMID:7553862 ISO UniProtKB:P32851 F syntaxin 1A (brain) HPC-1 protein taxon:10090 20090324 MGI 305586 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:98724 Tgfa GO:0005515 MGI:MGI:3527303|PMID:15572151 IDA F transforming growth factor alpha protein taxon:10090 20170704 MGI #------------ # GO_AR:0000006 IEP usage is restricted to terms from the Biological Process ontology Warning count: 5 124438 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology MGI MGI:109602 Gphn GO:0045211 MGI:MGI:5819334|PMID:24894704 IEP C gephyrin 5730552E08Rik|geph protein taxon:10090 20160620 GOC 124454 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology MGI MGI:109602 Gphn GO:0099634 MGI:MGI:5819334|PMID:24894704 IEP C gephyrin 5730552E08Rik|geph protein taxon:10090 20160620 GOC 173014 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology MGI MGI:1346876 Map3k5 GO:0005622 MGI:MGI:5320687|PMID:22337877 IEP C mitogen-activated protein kinase kinase kinase 5 7420452D20Rik|ASK|ASK1|Mekk5 protein taxon:10090 20120222 GOC 202617 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology MGI MGI:1354184 Nox4 GO:0005623 MGI:MGI:3795840|PMID:18431508 IEP C NADPH oxidase 4 protein taxon:10090 20110310 GOC 204349 GO_AR:0000006 Warning IEP usage is restricted to terms from the Biological Process ontology MGI MGI:1352466 Nr2c2 GO:0005622 MGI:MGI:5320687|PMID:22337877 IEP C nuclear receptor subfamily 2, group C, member 2 TAK1|Tr4 protein taxon:10090 20120222 GOC #------------ # GO_AR:0000014 Valid GO term ID Warning count: 1 304859 GO_AR:0000014 Warning The id 'GO:0001142' in the c16 annotation extension is an alternate id for: GO:0034246 MGI MGI:107810 Tfam GO:0001018 MGI:MGI:6115571|PMID:2628167 IDA F transcription factor A, mitochondrial Hmgts|mtTFA|tsHMG protein taxon:10090 20180208 GO_Noctua part_of(GO:0001142) #------------ # GO_AR:0000017 IDA annotations must not have a With/From entry Warning count: 1 184152 GO_AR:0000017 Warning IDA annotations must not have a With/From entry MGI MGI:2385618 Mmrn2 GO:0005515 MGI:MGI:5780028|PMID:25745997 IDA UniProtKB:Q8VCP9 F multimerin 2 Emilin3|EndoGlyx-1|ENDOGLYX1 protein taxon:10090 20161223 GO_Noctua has_input(MGI:MGI:1914114) #------------ # GO_AR:0000018 IPI annotations require a With/From entry Warning count: 5 151971 GO_AR:0000018 Warning IPI annotations require a With/From entry MGI MGI:96605 Itga6 GO:0005515 MGI:MGI:3761951|PMID:17716972 IPI F integrin alpha 6 5033401O05Rik|Cd49f protein taxon:10090 20180201 MGI 231920 GO_AR:0000018 Warning IPI annotations require a With/From entry MGI MGI:1351466 Plek2 GO:0032266 MGI:MGI:5902431|PMID:17008542 IPI F pleckstrin 2 protein taxon:10090 20180402 GO_Noctua 231923 GO_AR:0000018 Warning IPI annotations require a With/From entry MGI MGI:1351466 Plek2 GO:0043325 MGI:MGI:5902431|PMID:17008542 IPI F pleckstrin 2 protein taxon:10090 20180402 GO_Noctua 231926 GO_AR:0000018 Warning IPI annotations require a With/From entry MGI MGI:1351466 Plek2 GO:0080025 MGI:MGI:5902431|PMID:17008542 IPI F pleckstrin 2 protein taxon:10090 20180402 GO_Noctua 245657 GO_AR:0000018 Warning IPI annotations require a With/From entry MGI MGI:104908 Ptk2b GO:0005515 MGI:MGI:5758807|PMID:12771146 IPI F PTK2 protein tyrosine kinase 2 beta CAKbeta|calcium-dependent tyrosine kinase|cellular adhesion kinase beta|E430023O05Rik|proline-rich tyrosine kinase 2|PYK2|Raftk|related adhesion focal tyrosine kinase protein taxon:10090 20180402 GO_Noctua has_input(PR:000049741),occurs_in(CL:0000057),part_of(GO:0004713) #------------