GO:0005739	mitochondrion	AnnotationPropagation	C	GO:0033617	mitochondrial respiratory chain complex IV assembly	ISS
GO:0016311	dephosphorylation	AnnotationPropagation	P	GO:0051800	phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity	IDA
GO:0032508	DNA duplex unwinding	AnnotationPropagation	P	GO:0004003	ATP-dependent DNA helicase activity	ISS
GO:0055114	oxidation-reduction process	AnnotationPropagation	P	GO:0003997	acyl-CoA oxidase activity	ISS
GO:0005623	cell	AnnotationPropagation	C	GO:0048388	endosomal lumen acidification	IMP
GO:0046854	phosphatidylinositol phosphorylation	AnnotationPropagation	P	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	IDA
GO:0000413	protein peptidyl-prolyl isomerization	AnnotationPropagation	P	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	ISS
GO:0043547	positive regulation of GTPase activity	AnnotationPropagation	P	GO:0005096	GTPase activator activity	IMP
GO:0006259	DNA metabolic process	AnnotationPropagation	P	GO:0004531	deoxyribonuclease II activity	ISS
GO:0090305	nucleic acid phosphodiester bond hydrolysis	AnnotationPropagation	P	GO:0004531	deoxyribonuclease II activity	ISS
GO:0005622	intracellular	AnnotationPropagation	C	GO:0016973	poly(A)+ mRNA export from nucleus	ISS
GO:0005623	cell	AnnotationPropagation	C	GO:0016973	poly(A)+ mRNA export from nucleus	ISS
GO:0016310	phosphorylation	AnnotationPropagation	P	GO:0004143	diacylglycerol kinase activity	IDA
GO:0046835	carbohydrate phosphorylation	AnnotationPropagation	P	GO:0003872	6-phosphofructokinase activity	IDA
GO:0061615	glycolytic process through fructose-6-phosphate	AnnotationPropagation	P	GO:0003872	6-phosphofructokinase activity	IDA
GO:0055114	oxidation-reduction process	AnnotationPropagation	P	GO:0004458	D-lactate dehydrogenase (cytochrome) activity	ISS
GO:0005622	intracellular	AnnotationPropagation	C	GO:0045040	protein import into mitochondrial outer membrane	TAS
GO:0005623	cell	AnnotationPropagation	C	GO:0045040	protein import into mitochondrial outer membrane	TAS
GO:0005737	cytoplasm	AnnotationPropagation	C	GO:0045040	protein import into mitochondrial outer membrane	TAS
GO:0005739	mitochondrion	AnnotationPropagation	C	GO:0045040	protein import into mitochondrial outer membrane	TAS
GO:0005622	intracellular	AnnotationPropagation	C	GO:0032482	Rab protein signal transduction	IMP
GO:0006470	protein dephosphorylation	AnnotationPropagation	P	GO:0004722	protein serine/threonine phosphatase activity	IDA
GO:0006508	proteolysis	AnnotationPropagation	P	GO:0004222	metalloendopeptidase activity	ISS
GO:0005622	intracellular	AnnotationPropagation	C	GO:0045040	protein import into mitochondrial outer membrane	TAS
GO:0005623	cell	AnnotationPropagation	C	GO:0045040	protein import into mitochondrial outer membrane	TAS
GO:0005737	cytoplasm	AnnotationPropagation	C	GO:0045040	protein import into mitochondrial outer membrane	TAS
GO:0005739	mitochondrion	AnnotationPropagation	C	GO:0045040	protein import into mitochondrial outer membrane	TAS
GO:0055114	oxidation-reduction process	AnnotationPropagation	P	GO:0047131	saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity	ISS
GO:0055114	oxidation-reduction process	AnnotationPropagation	P	GO:0017150	tRNA dihydrouridine synthase activity	ISS
GO:0002943	tRNA dihydrouridine synthesis	AnnotationPropagation	P	GO:0017150	tRNA dihydrouridine synthase activity	ISS
GO:0030488	tRNA methylation	AnnotationPropagation	P	GO:0016428	tRNA (cytosine-5-)-methyltransferase activity	IDA
GO:0055114	oxidation-reduction process	AnnotationPropagation	P	GO:0017150	tRNA dihydrouridine synthase activity	ISS
GO:0002943	tRNA dihydrouridine synthesis	AnnotationPropagation	P	GO:0017150	tRNA dihydrouridine synthase activity	ISS
GO:0005622	intracellular	AnnotationPropagation	C	GO:0019933	cAMP-mediated signaling	IMP
GO:0055114	oxidation-reduction process	AnnotationPropagation	P	GO:0008137	NADH dehydrogenase (ubiquinone) activity	ISS
GO:0032508	DNA duplex unwinding	AnnotationPropagation	P	GO:0004003	ATP-dependent DNA helicase activity	ISS
GO:0005623	cell	AnnotationPropagation	C	GO:0045053	protein retention in Golgi apparatus	ISS
GO:0032259	methylation	AnnotationPropagation	P	GO:0003908	methylated-DNA-[protein]-cysteine S-methyltransferase activity	ISS
GO:0055114	oxidation-reduction process	AnnotationPropagation	P	GO:0004155	6,7-dihydropteridine reductase activity	IDA
GO:0005739	mitochondrion	AnnotationPropagation	C	GO:0070900	mitochondrial tRNA modification	IDA
GO:0006508	proteolysis	AnnotationPropagation	P	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IDA
GO:0055114	oxidation-reduction process	AnnotationPropagation	P	GO:0004146	dihydrofolate reductase activity	IDA
GO:0005622	intracellular	AnnotationPropagation	C	GO:0006606	protein import into nucleus	ISS
GO:0005623	cell	AnnotationPropagation	C	GO:0006606	protein import into nucleus	ISS
GO:0006468	protein phosphorylation	AnnotationPropagation	P	GO:0004672	protein kinase activity	IDA
GO:0055114	oxidation-reduction process	AnnotationPropagation	P	GO:0004029	aldehyde dehydrogenase (NAD) activity	ISS
GO:0032508	DNA duplex unwinding	AnnotationPropagation	P	GO:0043139	5'-3' DNA helicase activity	ISS
GO:0043547	positive regulation of GTPase activity	AnnotationPropagation	P	GO:0005096	GTPase activator activity	ISS
GO:0043085	positive regulation of catalytic activity	AnnotationPropagation	P	GO:0016176	superoxide-generating NADPH oxidase activator activity	ISS
GO:0006355	regulation of transcription, DNA-templated	AnnotationPropagation	P	GO:0003700	DNA binding transcription factor activity	IDA
GO:0046854	phosphatidylinositol phosphorylation	AnnotationPropagation	P	GO:0016307	phosphatidylinositol phosphate kinase activity	ISS