#Line number RuleID ViolationType Message Line #------------ #------------ # Validation for #313 annotations in 318 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000014 Valid GO term ID Error count: 9 30 GO_AR:0000014 Error The id 'GO:0016563' in the annotation is an obsolete class ASAP ABF-0015085 ompR GO:0016563 PMID:17573480 IMP F DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP 31 GO_AR:0000014 Error The id 'GO:0016564' in the annotation is an obsolete class ASAP ABF-0015085 ompR GO:0016564 PMID:17573480 IMP F DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP 40 GO_AR:0000014 Error The id 'GO:0016563' in the annotation is an obsolete class ASAP ABF-0015577 hrpL GO:0016563 PMID:7592386 ISA ASAP:ACW-0293760 F RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080225 ASAP 84 GO_AR:0000014 Error The id 'GO:0030528' in the annotation is an obsolete class ASAP ABF-0016089 pecS GO:0030528 PMID:18790868 IMP F DNA-binding transcriptional regulatory protein PecS gene taxon:198628 20080130 ASAP 89 GO_AR:0000014 Error The id 'GO:0016564' in the annotation is an obsolete class ASAP ABF-0016544 scrR GO:0016564 PMID:10986236 ISA ASAP:ACW-0289472 F "Fructose repressor FruR, LacI family" gene taxon:198628 20080117 ASAP 167 GO_AR:0000014 Error The id 'GO:0016563' in the annotation is an obsolete class ASAP ABF-0018901 rhaS GO:0016563 PMID:14982630 IMP F "DNA-binding transcriptional activator, L-rhamnose-binding" JW3876|rhaC|ECK3898 gene taxon:198628 20080123 ASAP 191 GO_AR:0000014 Error The id 'GO:0016564' in the annotation is an obsolete class ASAP ABF-0019414 expR GO:0016564 PMID:16831870 IDA F DNA-binding transcriptional regulatory protein ExpR gene taxon:198628 20080208 ASAP 221 GO_AR:0000014 Error The id 'GO:0016563' in the annotation is an obsolete class ASAP ABF-0019594 hrpS GO:0016563 PMID:7592386 ISA ASAP:ACW-0293740 F HrpS type III protein secretion system regulatory protein gene taxon:198628 20080225 ASAP 260 GO_AR:0000014 Error The id 'GO:0016564' in the annotation is an obsolete class ASAP ABF-0020117 kdgR GO:0016564 PMID:1840643 IDA F DNA-binding transcriptional regulatory protein KdgR gene taxon:198628 20080115 ASAP #------------ # GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 1 270 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate ASAP ABF-0020512 gacA GO:0042710 PMID:18052890 IMP P "Response regulator of the two-component transcriptional regulatory system UvrY-BarA (ExpA-ExpS, GacA-GacS)" gene taxon:198628 20080222 ASAP #------------ # GO_AR:0000014 Valid GO term ID Warning count: 14 28 GO_AR:0000014 Warning The id 'GO:0045941' in the annotation is an alternate id for: GO:0045893 ASAP ABF-0015085 ompR GO:0045941 PMID:17573480 IMP P DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP 29 GO_AR:0000014 Warning The id 'GO:0016481' in the annotation is an alternate id for: GO:0045892 ASAP ABF-0015085 ompR GO:0016481 PMID:17573480 IMP P DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP 37 GO_AR:0000014 Warning The id 'GO:0032022' in the annotation is an alternate id for: GO:0090606 ASAP ABF-0015577 hrpL GO:0032022 PMID:15629935 IMP P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080131 ASAP 39 GO_AR:0000014 Warning The id 'GO:0045941' in the annotation is an alternate id for: GO:0045893 ASAP ABF-0015577 hrpL GO:0045941 PMID:7592386 ISA ASAP:ACW-0293760 P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080225 ASAP 86 GO_AR:0000014 Warning The id 'GO:0045449' in the annotation is an alternate id for: GO:0006355 ASAP ABF-0016089 pecS GO:0045449 PMID:18790868 IMP P DNA-binding transcriptional regulatory protein PecS gene taxon:198628 20080130 ASAP 88 GO_AR:0000014 Warning The id 'GO:0016481' in the annotation is an alternate id for: GO:0045892 ASAP ABF-0016544 scrR GO:0016481 PMID:10986236 ISA ASAP:ACW-0289472 P "Fructose repressor FruR, LacI family" gene taxon:198628 20080117 ASAP 166 GO_AR:0000014 Warning The id 'GO:0045941' in the annotation is an alternate id for: GO:0045893 ASAP ABF-0018901 rhaS GO:0045941 PMID:14982630 IMP P "DNA-binding transcriptional activator, L-rhamnose-binding" JW3876|rhaC|ECK3898 gene taxon:198628 20080123 ASAP 207 GO_AR:0000014 Warning The id 'GO:0032022' in the annotation is an alternate id for: GO:0090606 ASAP ABF-0019590 hrcJ GO:0032022 PMID:15629935 IMP P "Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)" gene taxon:198628 20080131 ASAP 214 GO_AR:0000014 Warning The id 'GO:0032022' in the annotation is an alternate id for: GO:0090606 ASAP ABF-0019593 hrpA GO:0032022 PMID:15629935 IMP P Hrp pili protein hrpA gene taxon:198628 20080131 ASAP 218 GO_AR:0000014 Warning The id 'GO:0032022' in the annotation is an alternate id for: GO:0090606 ASAP ABF-0019594 hrpS GO:0032022 PMID:15629935 IMP P HrpS type III protein secretion system regulatory protein gene taxon:198628 20080131 ASAP 220 GO_AR:0000014 Warning The id 'GO:0045941' in the annotation is an alternate id for: GO:0045893 ASAP ABF-0019594 hrpS GO:0045941 PMID:7592386 ISA ASAP:ACW-0293740 P HrpS type III protein secretion system regulatory protein gene taxon:198628 20080225 ASAP 225 GO_AR:0000014 Warning The id 'GO:0032022' in the annotation is an alternate id for: GO:0090606 ASAP ABF-0019598 hrpY GO:0032022 PMID:15629935 IMP P "DNA-binding response regulator, LuxR family, near polyamine transporter" gene taxon:198628 20080131 ASAP 229 GO_AR:0000014 Warning The id 'GO:0032022' in the annotation is an alternate id for: GO:0090606 ASAP ABF-0019600 hrpX GO:0032022 PMID:15629935 IMP P type III protein secretion system sensor kinase gene taxon:198628 20080131 ASAP 259 GO_AR:0000014 Warning The id 'GO:0016481' in the annotation is an alternate id for: GO:0045892 ASAP ABF-0020117 kdgR GO:0016481 PMID:1840643 IDA P DNA-binding transcriptional regulatory protein KdgR gene taxon:198628 20080115 ASAP #------------